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|---|---|---|---|---|---|---|---|
fdd8bc31_t__UCHL1_006__ENST00000514764___Biotype
|
[Name] UCHL1-010 [Transcript ID] ENST00000505232 [bp] 748 [Protein] 156aa [Translation ID] ENSP00000423348 [CCDS] - [UniProt] D6R974 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: UCHL1-006 (ENST00000514764)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000514764
|
40/1438042989510.73_20150728002309-00126-ip-10-236-191-2_425740129_0.json
|
fdd8bc31_t__UCHL1_006__ENST00000514764___Biotype
|
[Name] UCHL1-011 [Transcript ID] ENST00000504818 [bp] 726 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: UCHL1-006 (ENST00000514764)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000514764
|
40/1438042989510.73_20150728002309-00126-ip-10-236-191-2_425740129_0.json
|
fdd8bc31_t__UCHL1_006__ENST00000514764___Biotype
|
[Name] UCHL1-003 [Transcript ID] ENST00000381760 [bp] 1578 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: UCHL1-006 (ENST00000514764)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000514764
|
40/1438042989510.73_20150728002309-00126-ip-10-236-191-2_425740129_0.json
|
fdd8bc31_t__UCHL1_006__ENST00000514764___Biotype
|
[Name] UCHL1-004 [Transcript ID] ENST00000472501 [bp] 1550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: UCHL1-006 (ENST00000514764)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000514764
|
40/1438042989510.73_20150728002309-00126-ip-10-236-191-2_425740129_0.json
|
fdd8bc31_t__UCHL1_006__ENST00000514764___Biotype
|
[Name] UCHL1-006 [Transcript ID] ENST00000514764 [bp] 862 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: UCHL1-006 (ENST00000514764)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000514764
|
40/1438042989510.73_20150728002309-00126-ip-10-236-191-2_425740129_0.json
|
fdd8bc31_t__UCHL1_006__ENST00000514764___Biotype
|
[Name] UCHL1-008 [Transcript ID] ENST00000510566 [bp] 540 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: UCHL1-006 (ENST00000514764)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000514764
|
40/1438042989510.73_20150728002309-00126-ip-10-236-191-2_425740129_0.json
|
a5fbbf56_t__RAD51_010__ENST00000531277___UniProt
|
[Name] RAD51-001 [Transcript ID] ENST00000267868 [bp] 2449 [Protein] 339aa [Translation ID] ENSP00000267868 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10062 [RefSeq] NM_002875 NP_002866 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt]
|
Q06609
|
[
[
"Q",
"0",
"6",
"6",
"0",
"9"
],
[
"Q",
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"N",
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],
[
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],
[
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],
[
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"I",
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"4"
],
[
"H",
"0",
"Y",
"D",
"6",
"1"
]
] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: RAD51-010 (ENST00000531277)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000051180;r=15:40990955-41021832;t=ENST00000531277
|
40/1438042988305.14_20150728002308-00252-ip-10-236-191-2_423016554_0.json
|
a5fbbf56_t__RAD51_010__ENST00000531277___UniProt
|
[Name] RAD51-002 [Transcript ID] ENST00000423169 [bp] 1611 [Protein] 280aa [Translation ID] ENSP00000406602 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53932 [RefSeq] NM_001164270 NP_001157742 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt]
|
Q06609
|
[
[
"Q",
"0",
"6",
"6",
"0",
"9"
],
[
"Q",
"9",
"N",
"Z",
"G",
"9"
],
[
"E",
"9",
"P",
"N",
"T",
"5"
],
[
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"0"
],
[
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"I",
"5",
"4"
],
[
"H",
"0",
"Y",
"D",
"6",
"1"
]
] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: RAD51-010 (ENST00000531277)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000051180;r=15:40990955-41021832;t=ENST00000531277
|
40/1438042988305.14_20150728002308-00252-ip-10-236-191-2_423016554_0.json
|
a5fbbf56_t__RAD51_010__ENST00000531277___UniProt
|
[Name] RAD51-009 [Transcript ID] ENST00000382643 [bp] 1588 [Protein] 340aa [Translation ID] ENSP00000372088 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53931 [RefSeq] NM_001164269 NP_001157741 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt]
|
Q06609
|
[
[
"Q",
"0",
"6",
"6",
"0",
"9"
],
[
"Q",
"9",
"N",
"Z",
"G",
"9"
],
[
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"9",
"P",
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"5"
],
[
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],
[
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"P",
"I",
"5",
"4"
],
[
"H",
"0",
"Y",
"D",
"6",
"1"
]
] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: RAD51-010 (ENST00000531277)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000051180;r=15:40990955-41021832;t=ENST00000531277
|
40/1438042988305.14_20150728002308-00252-ip-10-236-191-2_423016554_0.json
|
a5fbbf56_t__RAD51_010__ENST00000531277___UniProt
|
[Name] RAD51-008 [Transcript ID] ENST00000532743 [bp] 1515 [Protein] 340aa [Translation ID] ENSP00000433924 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53931 [RefSeq] NM_133487 NP_597994 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt]
|
Q06609
|
[
[
"Q",
"0",
"6",
"6",
"0",
"9"
],
[
"Q",
"9",
"N",
"Z",
"G",
"9"
],
[
"E",
"9",
"P",
"N",
"T",
"5"
],
[
"E",
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"J",
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"0"
],
[
"E",
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"P",
"I",
"5",
"4"
],
[
"H",
"0",
"Y",
"D",
"6",
"1"
]
] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: RAD51-010 (ENST00000531277)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000051180;r=15:40990955-41021832;t=ENST00000531277
|
40/1438042988305.14_20150728002308-00252-ip-10-236-191-2_423016554_0.json
|
a5fbbf56_t__RAD51_010__ENST00000531277___UniProt
|
[Name] RAD51-003 [Transcript ID] ENST00000557850 [bp] 1397 [Protein] 242aa [Translation ID] ENSP00000454176 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt]
|
Q06609
|
[
[
"Q",
"0",
"6",
"6",
"0",
"9"
],
[
"Q",
"9",
"N",
"Z",
"G",
"9"
],
[
"E",
"9",
"P",
"N",
"T",
"5"
],
[
"E",
"9",
"P",
"J",
"3",
"0"
],
[
"E",
"9",
"P",
"I",
"5",
"4"
],
[
"H",
"0",
"Y",
"D",
"6",
"1"
]
] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: RAD51-010 (ENST00000531277)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000051180;r=15:40990955-41021832;t=ENST00000531277
|
40/1438042988305.14_20150728002308-00252-ip-10-236-191-2_423016554_0.json
|
a5fbbf56_t__RAD51_010__ENST00000531277___UniProt
|
[Name] RAD51-006 [Transcript ID] ENST00000526763 [bp] 625 [Protein] 75aa [Translation ID] ENSP00000431897 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt]
|
Q9NZG9
|
[
[
"Q",
"0",
"6",
"6",
"0",
"9"
],
[
"Q",
"9",
"N",
"Z",
"G",
"9"
],
[
"E",
"9",
"P",
"N",
"T",
"5"
],
[
"E",
"9",
"P",
"J",
"3",
"0"
],
[
"E",
"9",
"P",
"I",
"5",
"4"
],
[
"H",
"0",
"Y",
"D",
"6",
"1"
]
] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: RAD51-010 (ENST00000531277)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000051180;r=15:40990955-41021832;t=ENST00000531277
|
40/1438042988305.14_20150728002308-00252-ip-10-236-191-2_423016554_0.json
|
a5fbbf56_t__RAD51_010__ENST00000531277___UniProt
|
[Name] RAD51-007 [Transcript ID] ENST00000527860 [bp] 566 [Protein] 172aa [Translation ID] ENSP00000432759 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [UniProt]
|
E9PNT5
|
[
[
"Q",
"0",
"6",
"6",
"0",
"9"
],
[
"Q",
"9",
"N",
"Z",
"G",
"9"
],
[
"E",
"9",
"P",
"N",
"T",
"5"
],
[
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],
[
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"I",
"5",
"4"
],
[
"H",
"0",
"Y",
"D",
"6",
"1"
]
] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: RAD51-010 (ENST00000531277)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000051180;r=15:40990955-41021832;t=ENST00000531277
|
40/1438042988305.14_20150728002308-00252-ip-10-236-191-2_423016554_0.json
|
a5fbbf56_t__RAD51_010__ENST00000531277___UniProt
|
[Name] RAD51-004 [Transcript ID] ENST00000525066 [bp] 1545 [Protein] 151aa [Translation ID] ENSP00000431864 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [UniProt]
|
E9PJ30
|
[
[
"Q",
"0",
"6",
"6",
"0",
"9"
],
[
"Q",
"9",
"N",
"Z",
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],
[
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"T",
"5"
],
[
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],
[
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"I",
"5",
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],
[
"H",
"0",
"Y",
"D",
"6",
"1"
]
] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: RAD51-010 (ENST00000531277)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000051180;r=15:40990955-41021832;t=ENST00000531277
|
40/1438042988305.14_20150728002308-00252-ip-10-236-191-2_423016554_0.json
|
a5fbbf56_t__RAD51_010__ENST00000531277___UniProt
|
[Name] RAD51-010 [Transcript ID] ENST00000531277 [bp] 658 [Protein] 100aa [Translation ID] ENSP00000436512 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt]
|
E9PI54
|
[
[
"Q",
"0",
"6",
"6",
"0",
"9"
],
[
"Q",
"9",
"N",
"Z",
"G",
"9"
],
[
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],
[
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"0"
],
[
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"I",
"5",
"4"
],
[
"H",
"0",
"Y",
"D",
"6",
"1"
]
] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: RAD51-010 (ENST00000531277)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000051180;r=15:40990955-41021832;t=ENST00000531277
|
40/1438042988305.14_20150728002308-00252-ip-10-236-191-2_423016554_0.json
|
a5fbbf56_t__RAD51_010__ENST00000531277___UniProt
|
[Name] RAD51-013 [Transcript ID] ENST00000533741 [bp] 425 [Protein] 65aa [Translation ID] ENSP00000433053 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [UniProt]
|
H0YD61
|
[
[
"Q",
"0",
"6",
"6",
"0",
"9"
],
[
"Q",
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"N",
"Z",
"G",
"9"
],
[
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"9",
"P",
"N",
"T",
"5"
],
[
"E",
"9",
"P",
"J",
"3",
"0"
],
[
"E",
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"P",
"I",
"5",
"4"
],
[
"H",
"0",
"Y",
"D",
"6",
"1"
]
] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: RAD51-010 (ENST00000531277)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000051180;r=15:40990955-41021832;t=ENST00000531277
|
40/1438042988305.14_20150728002308-00252-ip-10-236-191-2_423016554_0.json
|
4d433789_Gene__Ddc__ENSMUSG00000020182___Protein
|
[Name] Ddc-202 [Transcript ID] ENSMUST00000178704 [bp] 2018 [Translation ID] ENSMUSP00000136467 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS24439 [UniProt] O88533 Q5SUV8 [RefSeq] NM_001190448 NP_001177377 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Protein]
|
480aa
|
[
[
"4",
"8",
"0",
"a",
"a"
],
[
"2",
"5",
"3",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Mus musculus - Supporting evidence - Gene: Ddc (ENSMUSG00000020182)
|
Protein
|
http://www.ensembl.org/Mus_musculus/Gene/Evidence?db=core;g=ENSMUSG00000020182;r=11:11814101-11898144
|
40/1438042981921.1_20150728002301-00081-ip-10-236-191-2_423630402_0.json
|
4d433789_Gene__Ddc__ENSMUSG00000020182___Protein
|
[Name] Ddc-201 [Transcript ID] ENSMUST00000109659 [bp] 1954 [Translation ID] ENSMUSP00000105286 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS24439 [UniProt] O88533 Q5SUV8 [RefSeq] NM_016672 NP_057881 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Protein]
|
480aa
|
[
[
"4",
"8",
"0",
"a",
"a"
],
[
"2",
"5",
"3",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Mus musculus - Supporting evidence - Gene: Ddc (ENSMUSG00000020182)
|
Protein
|
http://www.ensembl.org/Mus_musculus/Gene/Evidence?db=core;g=ENSMUSG00000020182;r=11:11814101-11898144
|
40/1438042981921.1_20150728002301-00081-ip-10-236-191-2_423630402_0.json
|
4d433789_Gene__Ddc__ENSMUSG00000020182___Protein
|
[Name] Ddc-001 [Transcript ID] ENSMUST00000066237 [bp] 1922 [Translation ID] ENSMUSP00000068525 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS24439 [UniProt] O88533 Q5SUV8 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Protein]
|
480aa
|
[
[
"4",
"8",
"0",
"a",
"a"
],
[
"2",
"5",
"3",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Mus musculus - Supporting evidence - Gene: Ddc (ENSMUSG00000020182)
|
Protein
|
http://www.ensembl.org/Mus_musculus/Gene/Evidence?db=core;g=ENSMUSG00000020182;r=11:11814101-11898144
|
40/1438042981921.1_20150728002301-00081-ip-10-236-191-2_423630402_0.json
|
4d433789_Gene__Ddc__ENSMUSG00000020182___Protein
|
[Name] Ddc-002 [Transcript ID] ENSMUST00000155690 [bp] 799 [Translation ID] ENSMUSP00000121096 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q5SUV9 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Protein]
|
253aa
|
[
[
"4",
"8",
"0",
"a",
"a"
],
[
"2",
"5",
"3",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Mus musculus - Supporting evidence - Gene: Ddc (ENSMUSG00000020182)
|
Protein
|
http://www.ensembl.org/Mus_musculus/Gene/Evidence?db=core;g=ENSMUSG00000020182;r=11:11814101-11898144
|
40/1438042981921.1_20150728002301-00081-ip-10-236-191-2_423630402_0.json
|
4d433789_Gene__Ddc__ENSMUSG00000020182___Protein
|
[Name] Ddc-008 [Transcript ID] ENSMUST00000146359 [bp] 1439 [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Protein]
|
No protein
|
[
[
"4",
"8",
"0",
"a",
"a"
],
[
"2",
"5",
"3",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Mus musculus - Supporting evidence - Gene: Ddc (ENSMUSG00000020182)
|
Protein
|
http://www.ensembl.org/Mus_musculus/Gene/Evidence?db=core;g=ENSMUSG00000020182;r=11:11814101-11898144
|
40/1438042981921.1_20150728002301-00081-ip-10-236-191-2_423630402_0.json
|
4d433789_Gene__Ddc__ENSMUSG00000020182___Protein
|
[Name] Ddc-007 [Transcript ID] ENSMUST00000136810 [bp] 964 [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Protein]
|
No protein
|
[
[
"4",
"8",
"0",
"a",
"a"
],
[
"2",
"5",
"3",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Mus musculus - Supporting evidence - Gene: Ddc (ENSMUSG00000020182)
|
Protein
|
http://www.ensembl.org/Mus_musculus/Gene/Evidence?db=core;g=ENSMUSG00000020182;r=11:11814101-11898144
|
40/1438042981921.1_20150728002301-00081-ip-10-236-191-2_423630402_0.json
|
4d433789_Gene__Ddc__ENSMUSG00000020182___Protein
|
[Name] Ddc-006 [Transcript ID] ENSMUST00000145033 [bp] 741 [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Protein]
|
No protein
|
[
[
"4",
"8",
"0",
"a",
"a"
],
[
"2",
"5",
"3",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Mus musculus - Supporting evidence - Gene: Ddc (ENSMUSG00000020182)
|
Protein
|
http://www.ensembl.org/Mus_musculus/Gene/Evidence?db=core;g=ENSMUSG00000020182;r=11:11814101-11898144
|
40/1438042981921.1_20150728002301-00081-ip-10-236-191-2_423630402_0.json
|
4d433789_Gene__Ddc__ENSMUSG00000020182___Protein
|
[Name] Ddc-005 [Transcript ID] ENSMUST00000134121 [bp] 701 [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Protein]
|
No protein
|
[
[
"4",
"8",
"0",
"a",
"a"
],
[
"2",
"5",
"3",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Mus musculus - Supporting evidence - Gene: Ddc (ENSMUSG00000020182)
|
Protein
|
http://www.ensembl.org/Mus_musculus/Gene/Evidence?db=core;g=ENSMUSG00000020182;r=11:11814101-11898144
|
40/1438042981921.1_20150728002301-00081-ip-10-236-191-2_423630402_0.json
|
4d433789_Gene__Ddc__ENSMUSG00000020182___Protein
|
[Name] Ddc-004 [Transcript ID] ENSMUST00000122971 [bp] 699 [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Protein]
|
No protein
|
[
[
"4",
"8",
"0",
"a",
"a"
],
[
"2",
"5",
"3",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Mus musculus - Supporting evidence - Gene: Ddc (ENSMUSG00000020182)
|
Protein
|
http://www.ensembl.org/Mus_musculus/Gene/Evidence?db=core;g=ENSMUSG00000020182;r=11:11814101-11898144
|
40/1438042981921.1_20150728002301-00081-ip-10-236-191-2_423630402_0.json
|
4d433789_Gene__Ddc__ENSMUSG00000020182___Protein
|
[Name] Ddc-003 [Transcript ID] ENSMUST00000134401 [bp] 661 [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Protein]
|
No protein
|
[
[
"4",
"8",
"0",
"a",
"a"
],
[
"2",
"5",
"3",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Mus musculus - Supporting evidence - Gene: Ddc (ENSMUSG00000020182)
|
Protein
|
http://www.ensembl.org/Mus_musculus/Gene/Evidence?db=core;g=ENSMUSG00000020182;r=11:11814101-11898144
|
40/1438042981921.1_20150728002301-00081-ip-10-236-191-2_423630402_0.json
|
5b8fe527__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Text?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224
|
40/1438042988305.14_20150728002308-00210-ip-10-236-191-2_429567134_0.json
|
5b8fe527__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Text?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224
|
40/1438042988305.14_20150728002308-00210-ip-10-236-191-2_429567134_0.json
|
5b8fe527__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Text?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224
|
40/1438042988305.14_20150728002308-00210-ip-10-236-191-2_429567134_0.json
|
5b8fe527__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Text?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224
|
40/1438042988305.14_20150728002308-00210-ip-10-236-191-2_429567134_0.json
|
5b8fe527__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Text?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224
|
40/1438042988305.14_20150728002308-00210-ip-10-236-191-2_429567134_0.json
|
5b8fe527__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Text?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224
|
40/1438042988305.14_20150728002308-00210-ip-10-236-191-2_429567134_0.json
|
5b8fe527__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Text?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224
|
40/1438042988305.14_20150728002308-00210-ip-10-236-191-2_429567134_0.json
|
5b8fe527__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Text?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224
|
40/1438042988305.14_20150728002308-00210-ip-10-236-191-2_429567134_0.json
|
5b8fe527__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Text?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224
|
40/1438042988305.14_20150728002308-00210-ip-10-236-191-2_429567134_0.json
|
5b8fe527__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Text?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224
|
40/1438042988305.14_20150728002308-00210-ip-10-236-191-2_429567134_0.json
|
5b8fe527__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Text?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224
|
40/1438042988305.14_20150728002308-00210-ip-10-236-191-2_429567134_0.json
|
5b8fe527__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Text?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224
|
40/1438042988305.14_20150728002308-00210-ip-10-236-191-2_429567134_0.json
|
5b8fe527__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Text?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224
|
40/1438042988305.14_20150728002308-00210-ip-10-236-191-2_429567134_0.json
|
5b8fe527__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Text?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224
|
40/1438042988305.14_20150728002308-00210-ip-10-236-191-2_429567134_0.json
|
5b8fe527__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Text?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224
|
40/1438042988305.14_20150728002308-00210-ip-10-236-191-2_429567134_0.json
|
5b8fe527__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Text?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224
|
40/1438042988305.14_20150728002308-00210-ip-10-236-191-2_429567134_0.json
|
5b8fe527__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Text?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224
|
40/1438042988305.14_20150728002308-00210-ip-10-236-191-2_429567134_0.json
|
e079a728_pt__RPGR_009__ENST00000378505___Flags
|
[Name] RPGR-009 [Transcript ID] ENST00000378505 [bp] 4767 [Protein] 1152aa [Translation ID] ENSP00000367766 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS35229 [UniProt] Q92834 [RefSeq] NM_001034853 NP_001030025 [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RPGR-009 (ENST00000378505)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000156313;r=X:38284409-38327544;t=ENST00000378505
|
40/1438042981921.1_20150728002301-00079-ip-10-236-191-2_426174413_0.json
|
e079a728_pt__RPGR_009__ENST00000378505___Flags
|
[Name] RPGR-001 [Transcript ID] ENST00000318842 [bp] 3108 [Protein] 815aa [Translation ID] ENSP00000322219 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14246 [UniProt] Q92834 [RefSeq] NM_000328 NP_000319 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RPGR-009 (ENST00000378505)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000156313;r=X:38284409-38327544;t=ENST00000378505
|
40/1438042981921.1_20150728002301-00079-ip-10-236-191-2_426174413_0.json
|
e079a728_pt__RPGR_009__ENST00000378505___Flags
|
[Name] RPGR-201 [Transcript ID] ENST00000339363 [bp] 3686 [Protein] 1020aa [Translation ID] ENSP00000343671 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q92834 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RPGR-009 (ENST00000378505)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000156313;r=X:38284409-38327544;t=ENST00000378505
|
40/1438042981921.1_20150728002301-00079-ip-10-236-191-2_426174413_0.json
|
e079a728_pt__RPGR_009__ENST00000378505___Flags
|
[Name] RPGR-006 [Transcript ID] ENST00000464437 [bp] 428 [Protein] 129aa [Translation ID] ENSP00000417574 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H7C4L1 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RPGR-009 (ENST00000378505)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000156313;r=X:38284409-38327544;t=ENST00000378505
|
40/1438042981921.1_20150728002301-00079-ip-10-236-191-2_426174413_0.json
|
e079a728_pt__RPGR_009__ENST00000378505___Flags
|
[Name] RPGR-004 [Transcript ID] ENST00000494707 [bp] 426 [Protein] 143aa [Translation ID] ENSP00000417336 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H7C4H4 [RefSeq] - [Flags]
|
5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RPGR-009 (ENST00000378505)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000156313;r=X:38284409-38327544;t=ENST00000378505
|
40/1438042981921.1_20150728002301-00079-ip-10-236-191-2_426174413_0.json
|
e079a728_pt__RPGR_009__ENST00000378505___Flags
|
[Name] RPGR-002 [Transcript ID] ENST00000482855 [bp] 2819 [Protein] 646aa [Translation ID] ENSP00000419276 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] Q92834 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RPGR-009 (ENST00000378505)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000156313;r=X:38284409-38327544;t=ENST00000378505
|
40/1438042981921.1_20150728002301-00079-ip-10-236-191-2_426174413_0.json
|
e079a728_pt__RPGR_009__ENST00000378505___Flags
|
[Name] RPGR-007 [Transcript ID] ENST00000474584 [bp] 2268 [Protein] 480aa [Translation ID] ENSP00000418926 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] Q92834 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RPGR-009 (ENST00000378505)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000156313;r=X:38284409-38327544;t=ENST00000378505
|
40/1438042981921.1_20150728002301-00079-ip-10-236-191-2_426174413_0.json
|
e079a728_pt__RPGR_009__ENST00000378505___Flags
|
[Name] RPGR-003 [Transcript ID] ENST00000476559 [bp] 1047 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RPGR-009 (ENST00000378505)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000156313;r=X:38284409-38327544;t=ENST00000378505
|
40/1438042981921.1_20150728002301-00079-ip-10-236-191-2_426174413_0.json
|
e079a728_pt__RPGR_009__ENST00000378505___Flags
|
[Name] RPGR-008 [Transcript ID] ENST00000494841 [bp] 653 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RPGR-009 (ENST00000378505)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000156313;r=X:38284409-38327544;t=ENST00000378505
|
40/1438042981921.1_20150728002301-00079-ip-10-236-191-2_426174413_0.json
|
e079a728_pt__RPGR_009__ENST00000378505___Flags
|
[Name] RPGR-005 [Transcript ID] ENST00000470183 [bp] 382 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RPGR-009 (ENST00000378505)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000156313;r=X:38284409-38327544;t=ENST00000378505
|
40/1438042981921.1_20150728002301-00079-ip-10-236-191-2_426174413_0.json
|
689fd043_pt__MAPT_012__ENST00000577017___Flags
|
[Name] MAPT-203 [Transcript ID] ENST00000344290 [bp] 6816 [Protein] 776aa [Translation ID] ENSP00000340820 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS45715 [UniProt] P10636 [RefSeq] NM_001123066 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: MAPT-012 (ENST00000577017)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000186868;r=17:44063025-44064461;t=ENST00000577017
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436233248_0.json
|
689fd043_pt__MAPT_012__ENST00000577017___Flags
|
[Name] MAPT-201 [Transcript ID] ENST00000262410 [bp] 6762 [Protein] 758aa [Translation ID] ENSP00000262410 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11501 [UniProt] A0A024R9Y1 P10636 [RefSeq] NM_016835 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: MAPT-012 (ENST00000577017)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000186868;r=17:44063025-44064461;t=ENST00000577017
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436233248_0.json
|
689fd043_pt__MAPT_012__ENST00000577017___Flags
|
[Name] MAPT-204 [Transcript ID] ENST00000351559 [bp] 5811 [Protein] 441aa [Translation ID] ENSP00000303214 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11499 [UniProt] A0A024RA17 P10636 [RefSeq] NM_005910 NP_005901 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: MAPT-012 (ENST00000577017)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000186868;r=17:44063025-44064461;t=ENST00000577017
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436233248_0.json
|
689fd043_pt__MAPT_012__ENST00000577017___Flags
|
[Name] MAPT-202 [Transcript ID] ENST00000340799 [bp] 5724 [Protein] 412aa [Translation ID] ENSP00000340438 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS45716 [UniProt] P10636 [RefSeq] NM_001123067 NP_001116539 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: MAPT-012 (ENST00000577017)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000186868;r=17:44063025-44064461;t=ENST00000577017
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436233248_0.json
|
689fd043_pt__MAPT_012__ENST00000577017___Flags
|
[Name] MAPT-205 [Transcript ID] ENST00000535772 [bp] 5718 [Protein] 410aa [Translation ID] ENSP00000443028 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS56033 [UniProt] P10636 [RefSeq] NM_001203251 NM_001203252 NP_001190180 NP_001190181 [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: MAPT-012 (ENST00000577017)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000186868;r=17:44063025-44064461;t=ENST00000577017
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436233248_0.json
|
689fd043_pt__MAPT_012__ENST00000577017___Flags
|
[Name] MAPT-002 [Transcript ID] ENST00000446361 [bp] 5345 [Protein] 383aa [Translation ID] ENSP00000408975 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11500 [UniProt] A0A024R9Y0 P10636 [RefSeq] NM_016834 NP_058518 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: MAPT-012 (ENST00000577017)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000186868;r=17:44063025-44064461;t=ENST00000577017
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436233248_0.json
|
689fd043_pt__MAPT_012__ENST00000577017___Flags
|
[Name] MAPT-004 [Transcript ID] ENST00000415613 [bp] 2331 [Protein] 776aa [Translation ID] ENSP00000410838 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS45715 [UniProt] P10636 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: MAPT-012 (ENST00000577017)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000186868;r=17:44063025-44064461;t=ENST00000577017
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436233248_0.json
|
689fd043_pt__MAPT_012__ENST00000577017___Flags
|
[Name] MAPT-008 [Transcript ID] ENST00000571987 [bp] 2277 [Protein] 758aa [Translation ID] ENSP00000458742 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11501 [UniProt] A0A024R9Y1 P10636 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: MAPT-012 (ENST00000577017)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000186868;r=17:44063025-44064461;t=ENST00000577017
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436233248_0.json
|
689fd043_pt__MAPT_012__ENST00000577017___Flags
|
[Name] MAPT-007 [Transcript ID] ENST00000574436 [bp] 1326 [Protein] 441aa [Translation ID] ENSP00000460965 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11499 [UniProt] A0A024RA17 P10636 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: MAPT-012 (ENST00000577017)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000186868;r=17:44063025-44064461;t=ENST00000577017
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436233248_0.json
|
689fd043_pt__MAPT_012__ENST00000577017___Flags
|
[Name] MAPT-003 [Transcript ID] ENST00000420682 [bp] 1239 [Protein] 412aa [Translation ID] ENSP00000413056 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS45716 [UniProt] P10636 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: MAPT-012 (ENST00000577017)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000186868;r=17:44063025-44064461;t=ENST00000577017
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436233248_0.json
|
689fd043_pt__MAPT_012__ENST00000577017___Flags
|
[Name] MAPT-006 [Transcript ID] ENST00000431008 [bp] 1233 [Protein] 410aa [Translation ID] ENSP00000389250 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS56033 [UniProt] P10636 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: MAPT-012 (ENST00000577017)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000186868;r=17:44063025-44064461;t=ENST00000577017
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436233248_0.json
|
689fd043_pt__MAPT_012__ENST00000577017___Flags
|
[Name] MAPT-001 [Transcript ID] ENST00000334239 [bp] 1107 [Protein] 352aa [Translation ID] ENSP00000334886 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11502 [UniProt] P10636 [RefSeq] NM_016841 NP_058525 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: MAPT-012 (ENST00000577017)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000186868;r=17:44063025-44064461;t=ENST00000577017
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436233248_0.json
|
689fd043_pt__MAPT_012__ENST00000577017___Flags
|
[Name] MAPT-009 [Transcript ID] ENST00000576518 [bp] 6778 [Protein] 341aa [Translation ID] ENSP00000458621 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] I3L170 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: MAPT-012 (ENST00000577017)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000186868;r=17:44063025-44064461;t=ENST00000577017
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436233248_0.json
|
689fd043_pt__MAPT_012__ENST00000577017___Flags
|
[Name] MAPT-011 [Transcript ID] ENST00000571311 [bp] 544 [Protein] 59aa [Translation ID] ENSP00000460048 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] I3L2Z2 [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: MAPT-012 (ENST00000577017)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000186868;r=17:44063025-44064461;t=ENST00000577017
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436233248_0.json
|
689fd043_pt__MAPT_012__ENST00000577017___Flags
|
[Name] MAPT-013 [Transcript ID] ENST00000570299 [bp] 889 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: MAPT-012 (ENST00000577017)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000186868;r=17:44063025-44064461;t=ENST00000577017
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436233248_0.json
|
689fd043_pt__MAPT_012__ENST00000577017___Flags
|
[Name] MAPT-012 [Transcript ID] ENST00000577017 [bp] 142 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: MAPT-012 (ENST00000577017)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000186868;r=17:44063025-44064461;t=ENST00000577017
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436233248_0.json
|
689fd043_pt__MAPT_012__ENST00000577017___Flags
|
[Name] MAPT-014 [Transcript ID] ENST00000572440 [bp] 5015 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: MAPT-012 (ENST00000577017)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000186868;r=17:44063025-44064461;t=ENST00000577017
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436233248_0.json
|
689fd043_pt__MAPT_012__ENST00000577017___Flags
|
[Name] MAPT-010 [Transcript ID] ENST00000576238 [bp] 1065 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: MAPT-012 (ENST00000577017)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000186868;r=17:44063025-44064461;t=ENST00000577017
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436233248_0.json
|
fd3cb883_SERPINA1_011__ENST00000556955___Flags
|
[Name] SERPINA1-203 [Transcript ID] ENST00000448921 [bp] 3532 [Protein] 418aa [Translation ID] ENSP00000416066 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] NM_001002236 NM_001127701 NM_001127703 NM_001127704 NM_001127705 [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-011 (ENST00000556955)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000556955
|
40/1438042988305.14_20150728002308-00309-ip-10-236-191-2_423658298_0.json
|
fd3cb883_SERPINA1_011__ENST00000556955___Flags
|
[Name] SERPINA1-202 [Transcript ID] ENST00000437397 [bp] 3340 [Protein] 418aa [Translation ID] ENSP00000408474 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] NM_001127702 NM_001127706 NM_001127707 [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-011 (ENST00000556955)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000556955
|
40/1438042988305.14_20150728002308-00309-ip-10-236-191-2_423658298_0.json
|
fd3cb883_SERPINA1_011__ENST00000556955___Flags
|
[Name] SERPINA1-201 [Transcript ID] ENST00000355814 [bp] 3236 [Protein] 418aa [Translation ID] ENSP00000348068 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] NM_001002235 NM_001127700 [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-011 (ENST00000556955)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000556955
|
40/1438042988305.14_20150728002308-00309-ip-10-236-191-2_423658298_0.json
|
fd3cb883_SERPINA1_011__ENST00000556955___Flags
|
[Name] SERPINA1-001 [Transcript ID] ENST00000440909 [bp] 3144 [Protein] 418aa [Translation ID] ENSP00000390299 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-011 (ENST00000556955)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000556955
|
40/1438042988305.14_20150728002308-00309-ip-10-236-191-2_423658298_0.json
|
fd3cb883_SERPINA1_011__ENST00000556955___Flags
|
[Name] SERPINA1-002 [Transcript ID] ENST00000393088 [bp] 1885 [Protein] 418aa [Translation ID] ENSP00000376803 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-011 (ENST00000556955)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000556955
|
40/1438042988305.14_20150728002308-00309-ip-10-236-191-2_423658298_0.json
|
fd3cb883_SERPINA1_011__ENST00000556955___Flags
|
[Name] SERPINA1-003 [Transcript ID] ENST00000404814 [bp] 1628 [Protein] 418aa [Translation ID] ENSP00000385960 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-011 (ENST00000556955)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000556955
|
40/1438042988305.14_20150728002308-00309-ip-10-236-191-2_423658298_0.json
|
fd3cb883_SERPINA1_011__ENST00000556955___Flags
|
[Name] SERPINA1-004 [Transcript ID] ENST00000393087 [bp] 1622 [Protein] 418aa [Translation ID] ENSP00000376802 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] NM_000295 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-011 (ENST00000556955)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000556955
|
40/1438042988305.14_20150728002308-00309-ip-10-236-191-2_423658298_0.json
|
fd3cb883_SERPINA1_011__ENST00000556955___Flags
|
[Name] SERPINA1-008 [Transcript ID] ENST00000449399 [bp] 1559 [Protein] 418aa [Translation ID] ENSP00000416354 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-011 (ENST00000556955)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000556955
|
40/1438042988305.14_20150728002308-00309-ip-10-236-191-2_423658298_0.json
|
fd3cb883_SERPINA1_011__ENST00000556955___Flags
|
[Name] SERPINA1-006 [Transcript ID] ENST00000402629 [bp] 1450 [Protein] 359aa [Translation ID] ENSP00000386094 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P01009 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-011 (ENST00000556955)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000556955
|
40/1438042988305.14_20150728002308-00309-ip-10-236-191-2_423658298_0.json
|
fd3cb883_SERPINA1_011__ENST00000556955___Flags
|
[Name] SERPINA1-007 [Transcript ID] ENST00000557492 [bp] 951 [Protein] 144aa [Translation ID] ENSP00000452452 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A0B4J278 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-011 (ENST00000556955)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000556955
|
40/1438042988305.14_20150728002308-00309-ip-10-236-191-2_423658298_0.json
|
fd3cb883_SERPINA1_011__ENST00000556955___Flags
|
[Name] SERPINA1-017 [Transcript ID] ENST00000556091 [bp] 643 [Protein] 156aa [Translation ID] ENSP00000452169 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V544 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-011 (ENST00000556955)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000556955
|
40/1438042988305.14_20150728002308-00309-ip-10-236-191-2_423658298_0.json
|
fd3cb883_SERPINA1_011__ENST00000556955___Flags
|
[Name] SERPINA1-010 [Transcript ID] ENST00000557118 [bp] 583 [Protein] 22aa [Translation ID] ENSP00000451826 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V4I7 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-011 (ENST00000556955)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000556955
|
40/1438042988305.14_20150728002308-00309-ip-10-236-191-2_423658298_0.json
|
fd3cb883_SERPINA1_011__ENST00000556955___Flags
|
[Name] SERPINA1-015 [Transcript ID] ENST00000553327 [bp] 581 [Protein] 92aa [Translation ID] ENSP00000452480 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V5R8 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-011 (ENST00000556955)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000556955
|
40/1438042988305.14_20150728002308-00309-ip-10-236-191-2_423658298_0.json
|
fd3cb883_SERPINA1_011__ENST00000556955___Flags
|
[Name] SERPINA1-011 [Transcript ID] ENST00000556955 [bp] 571 [Protein] 117aa [Translation ID] ENSP00000451098 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V387 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-011 (ENST00000556955)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000556955
|
40/1438042988305.14_20150728002308-00309-ip-10-236-191-2_423658298_0.json
|
fd3cb883_SERPINA1_011__ENST00000556955___Flags
|
[Name] SERPINA1-016 [Transcript ID] ENST00000554720 [bp] 446 [Protein] 105aa [Translation ID] ENSP00000450561 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V2B9 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-011 (ENST00000556955)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000556955
|
40/1438042988305.14_20150728002308-00309-ip-10-236-191-2_423658298_0.json
|
fd3cb883_SERPINA1_011__ENST00000556955___Flags
|
[Name] SERPINA1-005 [Transcript ID] ENST00000489769 [bp] 1562 [Protein] 306aa [Translation ID] ENSP00000451525 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] P01009 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-011 (ENST00000556955)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000556955
|
40/1438042988305.14_20150728002308-00309-ip-10-236-191-2_423658298_0.json
|
fd3cb883_SERPINA1_011__ENST00000556955___Flags
|
[Name] SERPINA1-014 [Transcript ID] ENST00000555289 [bp] 609 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-011 (ENST00000556955)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000556955
|
40/1438042988305.14_20150728002308-00309-ip-10-236-191-2_423658298_0.json
|
fd3cb883_SERPINA1_011__ENST00000556955___Flags
|
[Name] SERPINA1-012 [Transcript ID] ENST00000557093 [bp] 568 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-011 (ENST00000556955)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000556955
|
40/1438042988305.14_20150728002308-00309-ip-10-236-191-2_423658298_0.json
|
fd3cb883_SERPINA1_011__ENST00000556955___Flags
|
[Name] SERPINA1-013 [Transcript ID] ENST00000557361 [bp] 580 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-011 (ENST00000556955)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000556955
|
40/1438042988305.14_20150728002308-00309-ip-10-236-191-2_423658298_0.json
|
737065f2_ene__CACNA1F__ENSG00000102001___Biotype
|
[Name] CACNA1F-007 [Transcript ID] ENST00000376265 [bp] 6070 [Protein] 1977aa [Translation ID] ENSP00000365441 [CCDS] CCDS35253 [UniProt] O60840 [RefSeq] NM_005183 NP_005174 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CACNA1F (ENSG00000102001)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000102001;r=X:49205063-49233371
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436213792_0.json
|
737065f2_ene__CACNA1F__ENSG00000102001___Biotype
|
[Name] CACNA1F-001 [Transcript ID] ENST00000323022 [bp] 6037 [Protein] 1966aa [Translation ID] ENSP00000321618 [CCDS] CCDS59167 [UniProt] O60840 [RefSeq] NM_001256789 NP_001243718 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CACNA1F (ENSG00000102001)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000102001;r=X:49205063-49233371
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436213792_0.json
|
737065f2_ene__CACNA1F__ENSG00000102001___Biotype
|
[Name] CACNA1F-002 [Transcript ID] ENST00000376251 [bp] 5813 [Protein] 1912aa [Translation ID] ENSP00000365427 [CCDS] CCDS59166 [UniProt] O60840 [RefSeq] NM_001256790 NP_001243719 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CACNA1F (ENSG00000102001)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000102001;r=X:49205063-49233371
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436213792_0.json
|
737065f2_ene__CACNA1F__ENSG00000102001___Biotype
|
[Name] CACNA1F-005 [Transcript ID] ENST00000486943 [bp] 662 [Protein] 116aa [Translation ID] ENSP00000418961 [CCDS] - [UniProt] H7C549 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CACNA1F (ENSG00000102001)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000102001;r=X:49205063-49233371
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436213792_0.json
|
737065f2_ene__CACNA1F__ENSG00000102001___Biotype
|
[Name] CACNA1F-006 [Transcript ID] ENST00000480889 [bp] 505 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CACNA1F (ENSG00000102001)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000102001;r=X:49205063-49233371
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436213792_0.json
|
737065f2_ene__CACNA1F__ENSG00000102001___Biotype
|
[Name] CACNA1F-004 [Transcript ID] ENST00000481035 [bp] 714 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CACNA1F (ENSG00000102001)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000102001;r=X:49205063-49233371
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436213792_0.json
|
c8ae2558_pt__SNCA_004__ENST00000505199___Flags
|
[Name] SNCA-202 [Transcript ID] ENST00000420646 [bp] 3127 [Protein] 112aa [Translation ID] ENSP00000396241 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] NM_007308 NP_009292 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-004 (ENST00000505199)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000145335;r=4:89726616-89835685;t=ENST00000505199
|
40/1438042981921.1_20150728002301-00157-ip-10-236-191-2_425246303_0.json
|
c8ae2558_pt__SNCA_004__ENST00000505199___Flags
|
[Name] SNCA-003 [Transcript ID] ENST00000336904 [bp] 3041 [Protein] 140aa [Translation ID] ENSP00000338345 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_001146055 NP_001139527 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-004 (ENST00000505199)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000145335;r=4:89726616-89835685;t=ENST00000505199
|
40/1438042981921.1_20150728002301-00157-ip-10-236-191-2_425246303_0.json
|
c8ae2558_pt__SNCA_004__ENST00000505199___Flags
|
[Name] SNCA-001 [Transcript ID] ENST00000394986 [bp] 1420 [Protein] 140aa [Translation ID] ENSP00000378437 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_001146054 NP_001139526 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-004 (ENST00000505199)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000145335;r=4:89726616-89835685;t=ENST00000505199
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40/1438042981921.1_20150728002301-00157-ip-10-236-191-2_425246303_0.json
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c8ae2558_pt__SNCA_004__ENST00000505199___Flags
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[Name] SNCA-002 [Transcript ID] ENST00000394991 [bp] 1290 [Protein] 140aa [Translation ID] ENSP00000378442 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_000345 NP_000336 [Flags]
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Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
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[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-004 (ENST00000505199)
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Flags
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http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000145335;r=4:89726616-89835685;t=ENST00000505199
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40/1438042981921.1_20150728002301-00157-ip-10-236-191-2_425246303_0.json
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