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025dd3f5_t__PARK7_002__ENST00000338639___UniProt
|
[Name] PARK7-004 [Transcript ID] ENST00000493373 [bp] 624 [Protein] 189aa [Translation ID] ENSP00000465404 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [UniProt]
|
Q99497 V9HWC2
|
[
[
"Q",
"9",
"9",
"4",
"9",
"7",
" ",
"V",
"9",
"H",
"W",
"C",
"2"
],
[
"K",
"7",
"E",
"L",
"W",
"0"
],
[
"K",
"7",
"E",
"N",
"2",
"7"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-002 (ENST00000338639)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8021723-8031108;t=ENST00000338639
|
40/1438042981921.1_20150728002301-00064-ip-10-236-191-2_420701776_0.json
|
025dd3f5_t__PARK7_002__ENST00000338639___UniProt
|
[Name] PARK7-009 [Transcript ID] ENST00000497113 [bp] 670 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt]
|
-
|
[
[
"Q",
"9",
"9",
"4",
"9",
"7",
" ",
"V",
"9",
"H",
"W",
"C",
"2"
],
[
"K",
"7",
"E",
"L",
"W",
"0"
],
[
"K",
"7",
"E",
"N",
"2",
"7"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-002 (ENST00000338639)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8021723-8031108;t=ENST00000338639
|
40/1438042981921.1_20150728002301-00064-ip-10-236-191-2_420701776_0.json
|
025dd3f5_t__PARK7_002__ENST00000338639___UniProt
|
[Name] PARK7-008 [Transcript ID] ENST00000465354 [bp] 949 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [UniProt]
|
-
|
[
[
"Q",
"9",
"9",
"4",
"9",
"7",
" ",
"V",
"9",
"H",
"W",
"C",
"2"
],
[
"K",
"7",
"E",
"L",
"W",
"0"
],
[
"K",
"7",
"E",
"N",
"2",
"7"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-002 (ENST00000338639)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8021723-8031108;t=ENST00000338639
|
40/1438042981921.1_20150728002301-00064-ip-10-236-191-2_420701776_0.json
|
025dd3f5_t__PARK7_002__ENST00000338639___UniProt
|
[Name] PARK7-007 [Transcript ID] ENST00000460192 [bp] 567 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt]
|
-
|
[
[
"Q",
"9",
"9",
"4",
"9",
"7",
" ",
"V",
"9",
"H",
"W",
"C",
"2"
],
[
"K",
"7",
"E",
"L",
"W",
"0"
],
[
"K",
"7",
"E",
"N",
"2",
"7"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-002 (ENST00000338639)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8021723-8031108;t=ENST00000338639
|
40/1438042981921.1_20150728002301-00064-ip-10-236-191-2_420701776_0.json
|
204f495c_ene__CACNA1F__ENSG00000102001___Flags
|
[Name] CACNA1F-007 [Transcript ID] ENST00000376265 [bp] 6070 [Protein] 1977aa [Translation ID] ENSP00000365441 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS35253 [UniProt] O60840 [RefSeq] NM_005183 NP_005174 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CACNA1F (ENSG00000102001)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000102001;r=X:49205063-49233371
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436213792_0.json
|
204f495c_ene__CACNA1F__ENSG00000102001___Flags
|
[Name] CACNA1F-001 [Transcript ID] ENST00000323022 [bp] 6037 [Protein] 1966aa [Translation ID] ENSP00000321618 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS59167 [UniProt] O60840 [RefSeq] NM_001256789 NP_001243718 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CACNA1F (ENSG00000102001)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000102001;r=X:49205063-49233371
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436213792_0.json
|
204f495c_ene__CACNA1F__ENSG00000102001___Flags
|
[Name] CACNA1F-002 [Transcript ID] ENST00000376251 [bp] 5813 [Protein] 1912aa [Translation ID] ENSP00000365427 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS59166 [UniProt] O60840 [RefSeq] NM_001256790 NP_001243719 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CACNA1F (ENSG00000102001)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000102001;r=X:49205063-49233371
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436213792_0.json
|
204f495c_ene__CACNA1F__ENSG00000102001___Flags
|
[Name] CACNA1F-005 [Transcript ID] ENST00000486943 [bp] 662 [Protein] 116aa [Translation ID] ENSP00000418961 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H7C549 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CACNA1F (ENSG00000102001)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000102001;r=X:49205063-49233371
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436213792_0.json
|
204f495c_ene__CACNA1F__ENSG00000102001___Flags
|
[Name] CACNA1F-006 [Transcript ID] ENST00000480889 [bp] 505 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CACNA1F (ENSG00000102001)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000102001;r=X:49205063-49233371
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436213792_0.json
|
204f495c_ene__CACNA1F__ENSG00000102001___Flags
|
[Name] CACNA1F-004 [Transcript ID] ENST00000481035 [bp] 714 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CACNA1F (ENSG00000102001)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000102001;r=X:49205063-49233371
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436213792_0.json
|
2c877d3e_ne__SERPING1__ENSG00000149131___Flags
|
[Name] SERPING1-001 [Transcript ID] ENST00000278407 [bp] 2002 [Protein] 500aa [Translation ID] ENSP00000278407 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS7962 [UniProt] E9KL26 P05155 [RefSeq] NM_000062 NM_001032295 NP_000053 NP_001027466 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPING1 (ENSG00000149131)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000149131;r=11:57597387-57614853
|
45/1438042989331.34_20150728002309-00056-ip-10-236-191-2_421571118_0.json
|
2c877d3e_ne__SERPING1__ENSG00000149131___Flags
|
[Name] SERPING1-002 [Transcript ID] ENST00000403558 [bp] 2231 [Protein] 543aa [Translation ID] ENSP00000384420 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PGN7 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPING1 (ENSG00000149131)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000149131;r=11:57597387-57614853
|
45/1438042989331.34_20150728002309-00056-ip-10-236-191-2_421571118_0.json
|
2c877d3e_ne__SERPING1__ENSG00000149131___Flags
|
[Name] SERPING1-007 [Transcript ID] ENST00000378324 [bp] 1751 [Protein] 448aa [Translation ID] ENSP00000367575 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P05155 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPING1 (ENSG00000149131)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000149131;r=11:57597387-57614853
|
45/1438042989331.34_20150728002309-00056-ip-10-236-191-2_421571118_0.json
|
2c877d3e_ne__SERPING1__ENSG00000149131___Flags
|
[Name] SERPING1-005 [Transcript ID] ENST00000378323 [bp] 1733 [Protein] 505aa [Translation ID] ENSP00000367574 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P05155 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPING1 (ENSG00000149131)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000149131;r=11:57597387-57614853
|
45/1438042989331.34_20150728002309-00056-ip-10-236-191-2_421571118_0.json
|
2c877d3e_ne__SERPING1__ENSG00000149131___Flags
|
[Name] SERPING1-006 [Transcript ID] ENST00000340687 [bp] 1719 [Protein] 463aa [Translation ID] ENSP00000341861 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H9KV48 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPING1 (ENSG00000149131)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000149131;r=11:57597387-57614853
|
45/1438042989331.34_20150728002309-00056-ip-10-236-191-2_421571118_0.json
|
2c877d3e_ne__SERPING1__ENSG00000149131___Flags
|
[Name] SERPING1-004 [Transcript ID] ENST00000405496 [bp] 648 [Protein] 160aa [Translation ID] ENSP00000384561 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B5MCB9 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPING1 (ENSG00000149131)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000149131;r=11:57597387-57614853
|
45/1438042989331.34_20150728002309-00056-ip-10-236-191-2_421571118_0.json
|
2c877d3e_ne__SERPING1__ENSG00000149131___Flags
|
[Name] SERPING1-201 [Transcript ID] ENST00000619430 [bp] 634 [Protein] 133aa [Translation ID] ENSP00000478572 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WUD9 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPING1 (ENSG00000149131)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000149131;r=11:57597387-57614853
|
45/1438042989331.34_20150728002309-00056-ip-10-236-191-2_421571118_0.json
|
2c877d3e_ne__SERPING1__ENSG00000149131___Flags
|
[Name] SERPING1-003 [Transcript ID] ENST00000457869 [bp] 569 [Protein] 122aa [Translation ID] ENSP00000399746 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JZJ9 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPING1 (ENSG00000149131)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000149131;r=11:57597387-57614853
|
45/1438042989331.34_20150728002309-00056-ip-10-236-191-2_421571118_0.json
|
2c877d3e_ne__SERPING1__ENSG00000149131___Flags
|
[Name] SERPING1-008 [Transcript ID] ENST00000531133 [bp] 1004 [Protein] 43aa [Translation ID] ENSP00000435431 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E9PK97 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPING1 (ENSG00000149131)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000149131;r=11:57597387-57614853
|
45/1438042989331.34_20150728002309-00056-ip-10-236-191-2_421571118_0.json
|
2c877d3e_ne__SERPING1__ENSG00000149131___Flags
|
[Name] SERPING1-011 [Transcript ID] ENST00000528996 [bp] 956 [Protein] 86aa [Translation ID] ENSP00000431226 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0YCA1 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPING1 (ENSG00000149131)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000149131;r=11:57597387-57614853
|
45/1438042989331.34_20150728002309-00056-ip-10-236-191-2_421571118_0.json
|
2c877d3e_ne__SERPING1__ENSG00000149131___Flags
|
[Name] SERPING1-009 [Transcript ID] ENST00000531797 [bp] 907 [Protein] 43aa [Translation ID] ENSP00000432554 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E9PK97 [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPING1 (ENSG00000149131)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000149131;r=11:57597387-57614853
|
45/1438042989331.34_20150728002309-00056-ip-10-236-191-2_421571118_0.json
|
2c877d3e_ne__SERPING1__ENSG00000149131___Flags
|
[Name] SERPING1-010 [Transcript ID] ENST00000531605 [bp] 579 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPING1 (ENSG00000149131)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000149131;r=11:57597387-57614853
|
45/1438042989331.34_20150728002309-00056-ip-10-236-191-2_421571118_0.json
|
2c877d3e_ne__SERPING1__ENSG00000149131___Flags
|
[Name] SERPING1-012 [Transcript ID] ENST00000530113 [bp] 908 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPING1 (ENSG00000149131)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000149131;r=11:57597387-57614853
|
45/1438042989331.34_20150728002309-00056-ip-10-236-191-2_421571118_0.json
|
93feefba___ZBTB7B_201__ENST00000417934___Biotype
|
[Name] ZBTB7B-201 [Transcript ID] ENST00000417934 [bp] 4017 [Protein] 573aa [Translation ID] ENSP00000406286 [CCDS] CCDS58030 [UniProt] O15156 [RefSeq] NM_001252406 NP_001239335 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
93feefba___ZBTB7B_201__ENST00000417934___Biotype
|
[Name] ZBTB7B-202 [Transcript ID] ENST00000535420 [bp] 3777 [Protein] 539aa [Translation ID] ENSP00000438647 [CCDS] CCDS1081 [UniProt] O15156 [RefSeq] NM_001256455 NP_001243384 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
93feefba___ZBTB7B_201__ENST00000417934___Biotype
|
[Name] ZBTB7B-001 [Transcript ID] ENST00000368426 [bp] 3594 [Protein] 539aa [Translation ID] ENSP00000357411 [CCDS] CCDS1081 [UniProt] O15156 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
93feefba___ZBTB7B_201__ENST00000417934___Biotype
|
[Name] ZBTB7B-002 [Transcript ID] ENST00000292176 [bp] 2129 [Protein] 539aa [Translation ID] ENSP00000292176 [CCDS] CCDS1081 [UniProt] O15156 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
93feefba___ZBTB7B_201__ENST00000417934___Biotype
|
[Name] ZBTB7B-005 [Transcript ID] ENST00000487542 [bp] 873 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
93feefba___ZBTB7B_201__ENST00000417934___Biotype
|
[Name] ZBTB7B-004 [Transcript ID] ENST00000461530 [bp] 658 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
93feefba___ZBTB7B_201__ENST00000417934___Biotype
|
[Name] ZBTB7B-003 [Transcript ID] ENST00000483226 [bp] 243 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
6e0490a8___ZBTB7B_201__ENST00000417934___Protein
|
[Name] ZBTB7B-201 [Transcript ID] ENST00000417934 [bp] 4017 [Translation ID] ENSP00000406286 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58030 [UniProt] O15156 [RefSeq] NM_001252406 NP_001239335 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Protein]
|
573aa
|
[
[
"5",
"7",
"3",
"a",
"a"
],
[
"5",
"3",
"9",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Protein
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
6e0490a8___ZBTB7B_201__ENST00000417934___Protein
|
[Name] ZBTB7B-202 [Transcript ID] ENST00000535420 [bp] 3777 [Translation ID] ENSP00000438647 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1081 [UniProt] O15156 [RefSeq] NM_001256455 NP_001243384 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Protein]
|
539aa
|
[
[
"5",
"7",
"3",
"a",
"a"
],
[
"5",
"3",
"9",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Protein
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
6e0490a8___ZBTB7B_201__ENST00000417934___Protein
|
[Name] ZBTB7B-001 [Transcript ID] ENST00000368426 [bp] 3594 [Translation ID] ENSP00000357411 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1081 [UniProt] O15156 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Protein]
|
539aa
|
[
[
"5",
"7",
"3",
"a",
"a"
],
[
"5",
"3",
"9",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Protein
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
6e0490a8___ZBTB7B_201__ENST00000417934___Protein
|
[Name] ZBTB7B-002 [Transcript ID] ENST00000292176 [bp] 2129 [Translation ID] ENSP00000292176 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1081 [UniProt] O15156 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Protein]
|
539aa
|
[
[
"5",
"7",
"3",
"a",
"a"
],
[
"5",
"3",
"9",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Protein
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
6e0490a8___ZBTB7B_201__ENST00000417934___Protein
|
[Name] ZBTB7B-005 [Transcript ID] ENST00000487542 [bp] 873 [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Protein]
|
No protein
|
[
[
"5",
"7",
"3",
"a",
"a"
],
[
"5",
"3",
"9",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Protein
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
6e0490a8___ZBTB7B_201__ENST00000417934___Protein
|
[Name] ZBTB7B-004 [Transcript ID] ENST00000461530 [bp] 658 [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Protein]
|
No protein
|
[
[
"5",
"7",
"3",
"a",
"a"
],
[
"5",
"3",
"9",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Protein
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
6e0490a8___ZBTB7B_201__ENST00000417934___Protein
|
[Name] ZBTB7B-003 [Transcript ID] ENST00000483226 [bp] 243 [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Protein]
|
No protein
|
[
[
"5",
"7",
"3",
"a",
"a"
],
[
"5",
"3",
"9",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Protein
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
90817d00___PRKACA_006__ENST00000593092___Biotype
|
[Name] PRKACA-001 [Transcript ID] ENST00000308677 [bp] 2677 [Protein] 351aa [Translation ID] ENSP00000309591 [CCDS] CCDS12304 [UniProt] A0A024R7J0 P17612 [RefSeq] NM_002730 NP_002721 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-006 (ENST00000593092)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14208060-14218216;t=ENST00000593092
|
45/1438042989897.84_20150728002309-00238-ip-10-236-191-2_429940894_0.json
|
90817d00___PRKACA_006__ENST00000593092___Biotype
|
[Name] PRKACA-003 [Transcript ID] ENST00000589994 [bp] 1127 [Protein] 343aa [Translation ID] ENSP00000466651 [CCDS] CCDS12305 [UniProt] P17612 [RefSeq] NM_207518 NP_997401 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-006 (ENST00000593092)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14208060-14218216;t=ENST00000593092
|
45/1438042989897.84_20150728002309-00238-ip-10-236-191-2_429940894_0.json
|
90817d00___PRKACA_006__ENST00000593092___Biotype
|
[Name] PRKACA-002 [Transcript ID] ENST00000590853 [bp] 1101 [Protein] 124aa [Translation ID] ENSP00000466976 [CCDS] - [UniProt] K7ENJ5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-006 (ENST00000593092)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14208060-14218216;t=ENST00000593092
|
45/1438042989897.84_20150728002309-00238-ip-10-236-191-2_429940894_0.json
|
90817d00___PRKACA_006__ENST00000593092___Biotype
|
[Name] PRKACA-006 [Transcript ID] ENST00000593092 [bp] 922 [Protein] 207aa [Translation ID] ENSP00000466289 [CCDS] - [UniProt] Q15136 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-006 (ENST00000593092)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14208060-14218216;t=ENST00000593092
|
45/1438042989897.84_20150728002309-00238-ip-10-236-191-2_429940894_0.json
|
90817d00___PRKACA_006__ENST00000593092___Biotype
|
[Name] PRKACA-010 [Transcript ID] ENST00000587372 [bp] 824 [Protein] 251aa [Translation ID] ENSP00000468352 [CCDS] - [UniProt] K7ERP6 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-006 (ENST00000593092)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14208060-14218216;t=ENST00000593092
|
45/1438042989897.84_20150728002309-00238-ip-10-236-191-2_429940894_0.json
|
90817d00___PRKACA_006__ENST00000593092___Biotype
|
[Name] PRKACA-008 [Transcript ID] ENST00000589284 [bp] 403 [Protein] 25aa [Translation ID] ENSP00000466660 [CCDS] - [UniProt] K7EMV1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-006 (ENST00000593092)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14208060-14218216;t=ENST00000593092
|
45/1438042989897.84_20150728002309-00238-ip-10-236-191-2_429940894_0.json
|
90817d00___PRKACA_006__ENST00000593092___Biotype
|
[Name] PRKACA-005 [Transcript ID] ENST00000350356 [bp] 3105 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-006 (ENST00000593092)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14208060-14218216;t=ENST00000593092
|
45/1438042989897.84_20150728002309-00238-ip-10-236-191-2_429940894_0.json
|
90817d00___PRKACA_006__ENST00000593092___Biotype
|
[Name] PRKACA-007 [Transcript ID] ENST00000587533 [bp] 2095 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-006 (ENST00000593092)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14208060-14218216;t=ENST00000593092
|
45/1438042989897.84_20150728002309-00238-ip-10-236-191-2_429940894_0.json
|
90817d00___PRKACA_006__ENST00000593092___Biotype
|
[Name] PRKACA-004 [Transcript ID] ENST00000536649 [bp] 1524 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-006 (ENST00000593092)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14208060-14218216;t=ENST00000593092
|
45/1438042989897.84_20150728002309-00238-ip-10-236-191-2_429940894_0.json
|
90817d00___PRKACA_006__ENST00000593092___Biotype
|
[Name] PRKACA-009 [Transcript ID] ENST00000588209 [bp] 942 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-006 (ENST00000593092)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14208060-14218216;t=ENST00000593092
|
45/1438042989897.84_20150728002309-00238-ip-10-236-191-2_429940894_0.json
|
fa905e1e_ene__SYNGAP1__ENSG00000197283___Flags
|
[Name] SYNGAP1-001 [Transcript ID] ENST00000629380 [bp] 9862 [Protein] 1343aa [Translation ID] ENSP00000486463 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS34434 [UniProt] - [RefSeq] NM_006772 NP_006763 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: SYNGAP1 (ENSG00000197283)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000197283;r=6:33387847-33421466
|
45/1438042989331.34_20150728002309-00221-ip-10-236-191-2_423201379_0.json
|
fa905e1e_ene__SYNGAP1__ENSG00000197283___Flags
|
[Name] SYNGAP1-010 [Transcript ID] ENST00000418600 [bp] 5828 [Protein] 1285aa [Translation ID] ENSP00000403636 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: SYNGAP1 (ENSG00000197283)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000197283;r=6:33387847-33421466
|
45/1438042989331.34_20150728002309-00221-ip-10-236-191-2_423201379_0.json
|
fa905e1e_ene__SYNGAP1__ENSG00000197283___Flags
|
[Name] SYNGAP1-003 [Transcript ID] ENST00000428982 [bp] 4339 [Protein] 1284aa [Translation ID] ENSP00000412475 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: SYNGAP1 (ENSG00000197283)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000197283;r=6:33387847-33421466
|
45/1438042989331.34_20150728002309-00221-ip-10-236-191-2_423201379_0.json
|
fa905e1e_ene__SYNGAP1__ENSG00000197283___Flags
|
[Name] SYNGAP1-007 [Transcript ID] ENST00000628646 [bp] 4264 [Protein] 1299aa [Translation ID] ENSP00000486431 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: SYNGAP1 (ENSG00000197283)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000197283;r=6:33387847-33421466
|
45/1438042989331.34_20150728002309-00221-ip-10-236-191-2_423201379_0.json
|
fa905e1e_ene__SYNGAP1__ENSG00000197283___Flags
|
[Name] SYNGAP1-009 [Transcript ID] ENST00000449372 [bp] 3930 [Protein] 1307aa [Translation ID] ENSP00000416519 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B7ZCA0 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: SYNGAP1 (ENSG00000197283)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000197283;r=6:33387847-33421466
|
45/1438042989331.34_20150728002309-00221-ip-10-236-191-2_423201379_0.json
|
fa905e1e_ene__SYNGAP1__ENSG00000197283___Flags
|
[Name] SYNGAP1-004 [Transcript ID] ENST00000293748 [bp] 4556 [Protein] 1284aa [Translation ID] ENSP00000293748 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] A0A0A0MQZ2 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: SYNGAP1 (ENSG00000197283)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000197283;r=6:33387847-33421466
|
45/1438042989331.34_20150728002309-00221-ip-10-236-191-2_423201379_0.json
|
fa905e1e_ene__SYNGAP1__ENSG00000197283___Flags
|
[Name] SYNGAP1-005 [Transcript ID] ENST00000495633 [bp] 260 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: SYNGAP1 (ENSG00000197283)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000197283;r=6:33387847-33421466
|
45/1438042989331.34_20150728002309-00221-ip-10-236-191-2_423201379_0.json
|
fa905e1e_ene__SYNGAP1__ENSG00000197283___Flags
|
[Name] SYNGAP1-002 [Transcript ID] ENST00000479510 [bp] 2073 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: SYNGAP1 (ENSG00000197283)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000197283;r=6:33387847-33421466
|
45/1438042989331.34_20150728002309-00221-ip-10-236-191-2_423201379_0.json
|
fa905e1e_ene__SYNGAP1__ENSG00000197283___Flags
|
[Name] SYNGAP1-008 [Transcript ID] ENST00000470232 [bp] 394 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: SYNGAP1 (ENSG00000197283)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000197283;r=6:33387847-33421466
|
45/1438042989331.34_20150728002309-00221-ip-10-236-191-2_423201379_0.json
|
a2fee605___ZBTB7B_201__ENST00000417934___Flags
|
[Name] ZBTB7B-201 [Transcript ID] ENST00000417934 [bp] 4017 [Protein] 573aa [Translation ID] ENSP00000406286 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58030 [UniProt] O15156 [RefSeq] NM_001252406 NP_001239335 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
a2fee605___ZBTB7B_201__ENST00000417934___Flags
|
[Name] ZBTB7B-202 [Transcript ID] ENST00000535420 [bp] 3777 [Protein] 539aa [Translation ID] ENSP00000438647 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1081 [UniProt] O15156 [RefSeq] NM_001256455 NP_001243384 [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
a2fee605___ZBTB7B_201__ENST00000417934___Flags
|
[Name] ZBTB7B-001 [Transcript ID] ENST00000368426 [bp] 3594 [Protein] 539aa [Translation ID] ENSP00000357411 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1081 [UniProt] O15156 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
a2fee605___ZBTB7B_201__ENST00000417934___Flags
|
[Name] ZBTB7B-002 [Transcript ID] ENST00000292176 [bp] 2129 [Protein] 539aa [Translation ID] ENSP00000292176 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1081 [UniProt] O15156 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
a2fee605___ZBTB7B_201__ENST00000417934___Flags
|
[Name] ZBTB7B-005 [Transcript ID] ENST00000487542 [bp] 873 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
a2fee605___ZBTB7B_201__ENST00000417934___Flags
|
[Name] ZBTB7B-004 [Transcript ID] ENST00000461530 [bp] 658 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
a2fee605___ZBTB7B_201__ENST00000417934___Flags
|
[Name] ZBTB7B-003 [Transcript ID] ENST00000483226 [bp] 243 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ZBTB7B-201 (ENST00000417934)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160685;r=1:155002630-155018522;t=ENST00000417934
|
45/1438042989897.84_20150728002309-00013-ip-10-236-191-2_419637453_0.json
|
74ca4cdd_t__PARK7_010__ENST00000469225___Flags
|
[Name] PARK7-001 [Transcript ID] ENST00000493678 [bp] 1088 [Protein] 189aa [Translation ID] ENSP00000418770 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-010 (ENST00000469225)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021752-8045565;t=ENST00000469225
|
45/1438042989897.84_20150728002309-00109-ip-10-236-191-2_417521105_0.json
|
74ca4cdd_t__PARK7_010__ENST00000469225___Flags
|
[Name] PARK7-005 [Transcript ID] ENST00000377491 [bp] 977 [Protein] 189aa [Translation ID] ENSP00000366711 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-010 (ENST00000469225)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021752-8045565;t=ENST00000469225
|
45/1438042989897.84_20150728002309-00109-ip-10-236-191-2_417521105_0.json
|
74ca4cdd_t__PARK7_010__ENST00000469225___Flags
|
[Name] PARK7-002 [Transcript ID] ENST00000338639 [bp] 949 [Protein] 189aa [Translation ID] ENSP00000340278 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] NM_001123377 NM_007262 NP_001116849 NP_009193 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-010 (ENST00000469225)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021752-8045565;t=ENST00000469225
|
45/1438042989897.84_20150728002309-00109-ip-10-236-191-2_417521105_0.json
|
74ca4cdd_t__PARK7_010__ENST00000469225___Flags
|
[Name] PARK7-006 [Transcript ID] ENST00000377488 [bp] 783 [Protein] 189aa [Translation ID] ENSP00000366708 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-010 (ENST00000469225)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021752-8045565;t=ENST00000469225
|
45/1438042989897.84_20150728002309-00109-ip-10-236-191-2_417521105_0.json
|
74ca4cdd_t__PARK7_010__ENST00000469225___Flags
|
[Name] PARK7-003 [Transcript ID] ENST00000377493 [bp] 795 [Protein] 169aa [Translation ID] ENSP00000466242 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ELW0 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-010 (ENST00000469225)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021752-8045565;t=ENST00000469225
|
45/1438042989897.84_20150728002309-00109-ip-10-236-191-2_417521105_0.json
|
74ca4cdd_t__PARK7_010__ENST00000469225___Flags
|
[Name] PARK7-010 [Transcript ID] ENST00000469225 [bp] 711 [Protein] 160aa [Translation ID] ENSP00000466756 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EN27 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-010 (ENST00000469225)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021752-8045565;t=ENST00000469225
|
45/1438042989897.84_20150728002309-00109-ip-10-236-191-2_417521105_0.json
|
74ca4cdd_t__PARK7_010__ENST00000469225___Flags
|
[Name] PARK7-004 [Transcript ID] ENST00000493373 [bp] 624 [Protein] 189aa [Translation ID] ENSP00000465404 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-010 (ENST00000469225)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021752-8045565;t=ENST00000469225
|
45/1438042989897.84_20150728002309-00109-ip-10-236-191-2_417521105_0.json
|
74ca4cdd_t__PARK7_010__ENST00000469225___Flags
|
[Name] PARK7-009 [Transcript ID] ENST00000497113 [bp] 670 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-010 (ENST00000469225)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021752-8045565;t=ENST00000469225
|
45/1438042989897.84_20150728002309-00109-ip-10-236-191-2_417521105_0.json
|
74ca4cdd_t__PARK7_010__ENST00000469225___Flags
|
[Name] PARK7-008 [Transcript ID] ENST00000465354 [bp] 949 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-010 (ENST00000469225)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021752-8045565;t=ENST00000469225
|
45/1438042989897.84_20150728002309-00109-ip-10-236-191-2_417521105_0.json
|
74ca4cdd_t__PARK7_010__ENST00000469225___Flags
|
[Name] PARK7-007 [Transcript ID] ENST00000460192 [bp] 567 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-010 (ENST00000469225)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021752-8045565;t=ENST00000469225
|
45/1438042989897.84_20150728002309-00109-ip-10-236-191-2_417521105_0.json
|
8b872982___PRKACA_006__ENST00000593092___Name
|
[Transcript ID] ENST00000308677 [bp] 2677 [Protein] 351aa [Translation ID] ENSP00000309591 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12304 [UniProt] A0A024R7J0 P17612 [RefSeq] NM_002730 NP_002721 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name]
|
PRKACA-001
|
[
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"1"
],
[
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"C",
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"-",
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],
[
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],
[
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[
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"-",
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],
[
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"A",
"-",
"0",
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],
[
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"A",
"-",
"0",
"0",
"5"
],
[
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"K",
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"C",
"A",
"-",
"0",
"0",
"7"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"4"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"9"
]
] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-006 (ENST00000593092)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14208060-14218216;t=ENST00000593092
|
45/1438042989897.84_20150728002309-00238-ip-10-236-191-2_429940894_0.json
|
8b872982___PRKACA_006__ENST00000593092___Name
|
[Transcript ID] ENST00000589994 [bp] 1127 [Protein] 343aa [Translation ID] ENSP00000466651 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12305 [UniProt] P17612 [RefSeq] NM_207518 NP_997401 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name]
|
PRKACA-003
|
[
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"1"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"3"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"2"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"6"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"1",
"0"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"8"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"5"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"7"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"4"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"9"
]
] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-006 (ENST00000593092)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14208060-14218216;t=ENST00000593092
|
45/1438042989897.84_20150728002309-00238-ip-10-236-191-2_429940894_0.json
|
8b872982___PRKACA_006__ENST00000593092___Name
|
[Transcript ID] ENST00000590853 [bp] 1101 [Protein] 124aa [Translation ID] ENSP00000466976 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ENJ5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name]
|
PRKACA-002
|
[
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"1"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"3"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"2"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"6"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"1",
"0"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"8"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"5"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"7"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"4"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"9"
]
] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-006 (ENST00000593092)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14208060-14218216;t=ENST00000593092
|
45/1438042989897.84_20150728002309-00238-ip-10-236-191-2_429940894_0.json
|
8b872982___PRKACA_006__ENST00000593092___Name
|
[Transcript ID] ENST00000593092 [bp] 922 [Protein] 207aa [Translation ID] ENSP00000466289 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q15136 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Name]
|
PRKACA-006
|
[
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"1"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"3"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"2"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"6"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"1",
"0"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"8"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"5"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"7"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"4"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"9"
]
] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-006 (ENST00000593092)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14208060-14218216;t=ENST00000593092
|
45/1438042989897.84_20150728002309-00238-ip-10-236-191-2_429940894_0.json
|
8b872982___PRKACA_006__ENST00000593092___Name
|
[Transcript ID] ENST00000587372 [bp] 824 [Protein] 251aa [Translation ID] ENSP00000468352 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ERP6 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
|
PRKACA-010
|
[
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"1"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"3"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"2"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"6"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"1",
"0"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"8"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"5"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"7"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"4"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"9"
]
] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-006 (ENST00000593092)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14208060-14218216;t=ENST00000593092
|
45/1438042989897.84_20150728002309-00238-ip-10-236-191-2_429940894_0.json
|
8b872982___PRKACA_006__ENST00000593092___Name
|
[Transcript ID] ENST00000589284 [bp] 403 [Protein] 25aa [Translation ID] ENSP00000466660 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EMV1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name]
|
PRKACA-008
|
[
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"1"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"3"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"2"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"6"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"1",
"0"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"8"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"5"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"7"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"4"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"9"
]
] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-006 (ENST00000593092)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14208060-14218216;t=ENST00000593092
|
45/1438042989897.84_20150728002309-00238-ip-10-236-191-2_429940894_0.json
|
8b872982___PRKACA_006__ENST00000593092___Name
|
[Transcript ID] ENST00000350356 [bp] 3105 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]
|
PRKACA-005
|
[
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"1"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"3"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"2"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"6"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"1",
"0"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"8"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"5"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"7"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"4"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"9"
]
] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-006 (ENST00000593092)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14208060-14218216;t=ENST00000593092
|
45/1438042989897.84_20150728002309-00238-ip-10-236-191-2_429940894_0.json
|
8b872982___PRKACA_006__ENST00000593092___Name
|
[Transcript ID] ENST00000587533 [bp] 2095 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA [Name]
|
PRKACA-007
|
[
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"1"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"3"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"2"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"6"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"1",
"0"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"8"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"5"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"7"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"4"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"9"
]
] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-006 (ENST00000593092)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14208060-14218216;t=ENST00000593092
|
45/1438042989897.84_20150728002309-00238-ip-10-236-191-2_429940894_0.json
|
8b872982___PRKACA_006__ENST00000593092___Name
|
[Transcript ID] ENST00000536649 [bp] 1524 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]
|
PRKACA-004
|
[
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"1"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"3"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"2"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"6"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"1",
"0"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"8"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"5"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"7"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"4"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"9"
]
] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-006 (ENST00000593092)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14208060-14218216;t=ENST00000593092
|
45/1438042989897.84_20150728002309-00238-ip-10-236-191-2_429940894_0.json
|
8b872982___PRKACA_006__ENST00000593092___Name
|
[Transcript ID] ENST00000588209 [bp] 942 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
|
PRKACA-009
|
[
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"1"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"3"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"2"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"6"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"1",
"0"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"8"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"5"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"7"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"4"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"9"
]
] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-006 (ENST00000593092)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14208060-14218216;t=ENST00000593092
|
45/1438042989897.84_20150728002309-00238-ip-10-236-191-2_429940894_0.json
|
25e7c37f_t__CALM1_008__ENST00000557123___Biotype
|
[Name] CALM1-001 [Transcript ID] ENST00000356978 [bp] 4242 [Protein] 149aa [Translation ID] ENSP00000349467 [CCDS] CCDS9892 [UniProt] B4DJ51 P62158 [RefSeq] NM_006888 NP_008819 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CALM1-008 (ENST00000557123)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000198668;r=14:90397032-90400431;t=ENST00000557123
|
45/1438042989897.84_20150728002309-00233-ip-10-236-191-2_425408937_0.json
|
25e7c37f_t__CALM1_008__ENST00000557123___Biotype
|
[Name] CALM1-201 [Transcript ID] ENST00000626705 [bp] 1341 [Protein] 83aa [Translation ID] ENSP00000486402 [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CALM1-008 (ENST00000557123)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000198668;r=14:90397032-90400431;t=ENST00000557123
|
45/1438042989897.84_20150728002309-00233-ip-10-236-191-2_425408937_0.json
|
25e7c37f_t__CALM1_008__ENST00000557123___Biotype
|
[Name] CALM1-004 [Transcript ID] ENST00000447653 [bp] 1104 [Protein] 150aa [Translation ID] ENSP00000403491 [CCDS] - [UniProt] E7ETZ0 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CALM1-008 (ENST00000557123)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000198668;r=14:90397032-90400431;t=ENST00000557123
|
45/1438042989897.84_20150728002309-00233-ip-10-236-191-2_425408937_0.json
|
25e7c37f_t__CALM1_008__ENST00000557123___Biotype
|
[Name] CALM1-006 [Transcript ID] ENST00000544280 [bp] 1064 [Protein] 113aa [Translation ID] ENSP00000442853 [CCDS] - [UniProt] Q96HY3 [RefSeq] NP_001292554 NP_001292555 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CALM1-008 (ENST00000557123)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000198668;r=14:90397032-90400431;t=ENST00000557123
|
45/1438042989897.84_20150728002309-00233-ip-10-236-191-2_425408937_0.json
|
25e7c37f_t__CALM1_008__ENST00000557123___Biotype
|
[Name] CALM1-012 [Transcript ID] ENST00000553542 [bp] 877 [Protein] 113aa [Translation ID] ENSP00000450829 [CCDS] - [UniProt] Q96HY3 [RefSeq] NP_001292554 NP_001292555 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CALM1-008 (ENST00000557123)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000198668;r=14:90397032-90400431;t=ENST00000557123
|
45/1438042989897.84_20150728002309-00233-ip-10-236-191-2_425408937_0.json
|
25e7c37f_t__CALM1_008__ENST00000557123___Biotype
|
[Name] CALM1-007 [Transcript ID] ENST00000557020 [bp] 557 [Protein] 98aa [Translation ID] ENSP00000451062 [CCDS] - [UniProt] G3V361 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CALM1-008 (ENST00000557123)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000198668;r=14:90397032-90400431;t=ENST00000557123
|
45/1438042989897.84_20150728002309-00233-ip-10-236-191-2_425408937_0.json
|
25e7c37f_t__CALM1_008__ENST00000557123___Biotype
|
[Name] CALM1-003 [Transcript ID] ENST00000553630 [bp] 1420 [Protein] 83aa [Translation ID] ENSP00000451646 [CCDS] - [UniProt] G3V479 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CALM1-008 (ENST00000557123)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000198668;r=14:90397032-90400431;t=ENST00000557123
|
45/1438042989897.84_20150728002309-00233-ip-10-236-191-2_425408937_0.json
|
25e7c37f_t__CALM1_008__ENST00000557123___Biotype
|
[Name] CALM1-013 [Transcript ID] ENST00000553422 [bp] 438 [Protein] 76aa [Translation ID] ENSP00000450425 [CCDS] - [UniProt] G3V226 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CALM1-008 (ENST00000557123)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000198668;r=14:90397032-90400431;t=ENST00000557123
|
45/1438042989897.84_20150728002309-00233-ip-10-236-191-2_425408937_0.json
|
25e7c37f_t__CALM1_008__ENST00000557123___Biotype
|
[Name] CALM1-016 [Transcript ID] ENST00000555132 [bp] 554 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CALM1-008 (ENST00000557123)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000198668;r=14:90397032-90400431;t=ENST00000557123
|
45/1438042989897.84_20150728002309-00233-ip-10-236-191-2_425408937_0.json
|
25e7c37f_t__CALM1_008__ENST00000557123___Biotype
|
[Name] CALM1-005 [Transcript ID] ENST00000553964 [bp] 2670 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CALM1-008 (ENST00000557123)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000198668;r=14:90397032-90400431;t=ENST00000557123
|
45/1438042989897.84_20150728002309-00233-ip-10-236-191-2_425408937_0.json
|
25e7c37f_t__CALM1_008__ENST00000557123___Biotype
|
[Name] CALM1-009 [Transcript ID] ENST00000556757 [bp] 588 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CALM1-008 (ENST00000557123)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000198668;r=14:90397032-90400431;t=ENST00000557123
|
45/1438042989897.84_20150728002309-00233-ip-10-236-191-2_425408937_0.json
|
25e7c37f_t__CALM1_008__ENST00000557123___Biotype
|
[Name] CALM1-010 [Transcript ID] ENST00000553995 [bp] 583 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CALM1-008 (ENST00000557123)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000198668;r=14:90397032-90400431;t=ENST00000557123
|
45/1438042989897.84_20150728002309-00233-ip-10-236-191-2_425408937_0.json
|
25e7c37f_t__CALM1_008__ENST00000557123___Biotype
|
[Name] CALM1-008 [Transcript ID] ENST00000557123 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CALM1-008 (ENST00000557123)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000198668;r=14:90397032-90400431;t=ENST00000557123
|
45/1438042989897.84_20150728002309-00233-ip-10-236-191-2_425408937_0.json
|
25e7c37f_t__CALM1_008__ENST00000557123___Biotype
|
[Name] CALM1-011 [Transcript ID] ENST00000555267 [bp] 554 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CALM1-008 (ENST00000557123)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000198668;r=14:90397032-90400431;t=ENST00000557123
|
45/1438042989897.84_20150728002309-00233-ip-10-236-191-2_425408937_0.json
|
25e7c37f_t__CALM1_008__ENST00000557123___Biotype
|
[Name] CALM1-014 [Transcript ID] ENST00000554296 [bp] 531 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CALM1-008 (ENST00000557123)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000198668;r=14:90397032-90400431;t=ENST00000557123
|
45/1438042989897.84_20150728002309-00233-ip-10-236-191-2_425408937_0.json
|
25e7c37f_t__CALM1_008__ENST00000557123___Biotype
|
[Name] CALM1-015 [Transcript ID] ENST00000556721 [bp] 444 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CALM1-008 (ENST00000557123)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000198668;r=14:90397032-90400431;t=ENST00000557123
|
45/1438042989897.84_20150728002309-00233-ip-10-236-191-2_425408937_0.json
|
4cfee044____Gene__FUS__ENSG00000089280___Flags
|
[Name] FUS-001 [Transcript ID] ENST00000254108 [bp] 5119 [Protein] 526aa [Translation ID] ENSP00000254108 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10707 [UniProt] P35637 Q6IBQ5 [RefSeq] NM_001170937 NM_004960 NP_001164408 NP_004951 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: FUS (ENSG00000089280)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000089280;r=16:31180110-31194871
|
45/1438042989897.84_20150728002309-00273-ip-10-236-191-2_423209253_0.json
|
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