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c8ae2558_pt__SNCA_004__ENST00000505199___Flags
[Name] SNCA-005 [Transcript ID] ENST00000345009 [bp] 1096 [Protein] 112aa [Translation ID] ENSP00000343683 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-004 (ENST00000505199)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000145335;r=4:89726616-89835685;t=ENST00000505199
40/1438042981921.1_20150728002301-00157-ip-10-236-191-2_425246303_0.json
c8ae2558_pt__SNCA_004__ENST00000505199___Flags
[Name] SNCA-008 [Transcript ID] ENST00000508895 [bp] 905 [Protein] 140aa [Translation ID] ENSP00000426955 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-004 (ENST00000505199)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000145335;r=4:89726616-89835685;t=ENST00000505199
40/1438042981921.1_20150728002301-00157-ip-10-236-191-2_425246303_0.json
c8ae2558_pt__SNCA_004__ENST00000505199___Flags
[Name] SNCA-006 [Transcript ID] ENST00000506244 [bp] 570 [Protein] 140aa [Translation ID] ENSP00000422238 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-004 (ENST00000505199)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000145335;r=4:89726616-89835685;t=ENST00000505199
40/1438042981921.1_20150728002301-00157-ip-10-236-191-2_425246303_0.json
c8ae2558_pt__SNCA_004__ENST00000505199___Flags
[Name] SNCA-201 [Transcript ID] ENST00000394989 [bp] 3167 [Protein] 126aa [Translation ID] ENSP00000378440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-004 (ENST00000505199)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000145335;r=4:89726616-89835685;t=ENST00000505199
40/1438042981921.1_20150728002301-00157-ip-10-236-191-2_425246303_0.json
c8ae2558_pt__SNCA_004__ENST00000505199___Flags
[Name] SNCA-203 [Transcript ID] ENST00000618500 [bp] 3022 [Protein] 126aa [Translation ID] ENSP00000484044 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-004 (ENST00000505199)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000145335;r=4:89726616-89835685;t=ENST00000505199
40/1438042981921.1_20150728002301-00157-ip-10-236-191-2_425246303_0.json
c8ae2558_pt__SNCA_004__ENST00000505199___Flags
[Name] SNCA-009 [Transcript ID] ENST00000502987 [bp] 731 [Protein] 115aa [Translation ID] ENSP00000426034 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EPV7 [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-004 (ENST00000505199)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000145335;r=4:89726616-89835685;t=ENST00000505199
40/1438042981921.1_20150728002301-00157-ip-10-236-191-2_425246303_0.json
c8ae2558_pt__SNCA_004__ENST00000505199___Flags
[Name] SNCA-004 [Transcript ID] ENST00000505199 [bp] 411 [Protein] 126aa [Translation ID] ENSP00000421485 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-004 (ENST00000505199)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000145335;r=4:89726616-89835685;t=ENST00000505199
40/1438042981921.1_20150728002301-00157-ip-10-236-191-2_425246303_0.json
c8ae2558_pt__SNCA_004__ENST00000505199___Flags
[Name] SNCA-007 [Transcript ID] ENST00000506691 [bp] 387 [Protein] 67aa [Translation ID] ENSP00000423445 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RA31 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-004 (ENST00000505199)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000145335;r=4:89726616-89835685;t=ENST00000505199
40/1438042981921.1_20150728002301-00157-ip-10-236-191-2_425246303_0.json
c8ae2558_pt__SNCA_004__ENST00000505199___Flags
[Name] SNCA-010 [Transcript ID] ENST00000611107 [bp] 297 [Protein] 98aa [Translation ID] ENSP00000479604 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS7 [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-004 (ENST00000505199)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000145335;r=4:89726616-89835685;t=ENST00000505199
40/1438042981921.1_20150728002301-00157-ip-10-236-191-2_425246303_0.json
41a6c616_t__MST1R_012__ENST00000490053___Flags
[Name] MST1R-001 [Transcript ID] ENST00000296474 [bp] 4536 [Protein] 1400aa [Translation ID] ENSP00000296474 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS2807 [UniProt] Q04912 [RefSeq] NM_002447 NP_002438 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MST1R-012 (ENST00000490053)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164078;r=3:49891771-49895439;t=ENST00000490053
40/1438042981921.1_20150728002301-00105-ip-10-236-191-2_428411130_0.json
41a6c616_t__MST1R_012__ENST00000490053___Flags
[Name] MST1R-002 [Transcript ID] ENST00000344206 [bp] 4198 [Protein] 1351aa [Translation ID] ENSP00000341325 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58833 [UniProt] Q04912 [RefSeq] NM_001244937 NP_001231866 [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MST1R-012 (ENST00000490053)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164078;r=3:49891771-49895439;t=ENST00000490053
40/1438042981921.1_20150728002301-00105-ip-10-236-191-2_428411130_0.json
41a6c616_t__MST1R_012__ENST00000490053___Flags
[Name] MST1R-203 [Transcript ID] ENST00000621387 [bp] 4449 [Protein] 1294aa [Translation ID] ENSP00000482642 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WZG2 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MST1R-012 (ENST00000490053)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164078;r=3:49891771-49895439;t=ENST00000490053
40/1438042981921.1_20150728002301-00105-ip-10-236-191-2_428411130_0.json
41a6c616_t__MST1R_012__ENST00000490053___Flags
[Name] MST1R-202 [Transcript ID] ENST00000613534 [bp] 2025 [Protein] 574aa [Translation ID] ENSP00000482827 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WZQ8 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MST1R-012 (ENST00000490053)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164078;r=3:49891771-49895439;t=ENST00000490053
40/1438042981921.1_20150728002301-00105-ip-10-236-191-2_428411130_0.json
41a6c616_t__MST1R_012__ENST00000490053___Flags
[Name] MST1R-201 [Transcript ID] ENST00000612032 [bp] 1065 [Protein] 254aa [Translation ID] ENSP00000481084 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H2E272 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MST1R-012 (ENST00000490053)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164078;r=3:49891771-49895439;t=ENST00000490053
40/1438042981921.1_20150728002301-00105-ip-10-236-191-2_428411130_0.json
41a6c616_t__MST1R_012__ENST00000490053___Flags
[Name] MST1R-011 [Transcript ID] ENST00000434765 [bp] 854 [Protein] 285aa [Translation ID] ENSP00000393294 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H7C074 [RefSeq] - [Flags]
5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MST1R-012 (ENST00000490053)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164078;r=3:49891771-49895439;t=ENST00000490053
40/1438042981921.1_20150728002301-00105-ip-10-236-191-2_428411130_0.json
41a6c616_t__MST1R_012__ENST00000490053___Flags
[Name] MST1R-010 [Transcript ID] ENST00000440292 [bp] 810 [Protein] 270aa [Translation ID] ENSP00000414792 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H7C3Z8 [RefSeq] - [Flags]
5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MST1R-012 (ENST00000490053)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164078;r=3:49891771-49895439;t=ENST00000490053
40/1438042981921.1_20150728002301-00105-ip-10-236-191-2_428411130_0.json
41a6c616_t__MST1R_012__ENST00000490053___Flags
[Name] MST1R-007 [Transcript ID] ENST00000411578 [bp] 4683 [Protein] 1032aa [Translation ID] ENSP00000407926 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] J3KQS7 [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MST1R-012 (ENST00000490053)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164078;r=3:49891771-49895439;t=ENST00000490053
40/1438042981921.1_20150728002301-00105-ip-10-236-191-2_428411130_0.json
41a6c616_t__MST1R_012__ENST00000490053___Flags
[Name] MST1R-006 [Transcript ID] ENST00000468525 [bp] 2727 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MST1R-012 (ENST00000490053)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164078;r=3:49891771-49895439;t=ENST00000490053
40/1438042981921.1_20150728002301-00105-ip-10-236-191-2_428411130_0.json
41a6c616_t__MST1R_012__ENST00000490053___Flags
[Name] MST1R-005 [Transcript ID] ENST00000485044 [bp] 1944 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MST1R-012 (ENST00000490053)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164078;r=3:49891771-49895439;t=ENST00000490053
40/1438042981921.1_20150728002301-00105-ip-10-236-191-2_428411130_0.json
41a6c616_t__MST1R_012__ENST00000490053___Flags
[Name] MST1R-004 [Transcript ID] ENST00000493535 [bp] 1626 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MST1R-012 (ENST00000490053)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164078;r=3:49891771-49895439;t=ENST00000490053
40/1438042981921.1_20150728002301-00105-ip-10-236-191-2_428411130_0.json
41a6c616_t__MST1R_012__ENST00000490053___Flags
[Name] MST1R-003 [Transcript ID] ENST00000497001 [bp] 1488 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MST1R-012 (ENST00000490053)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164078;r=3:49891771-49895439;t=ENST00000490053
40/1438042981921.1_20150728002301-00105-ip-10-236-191-2_428411130_0.json
41a6c616_t__MST1R_012__ENST00000490053___Flags
[Name] MST1R-013 [Transcript ID] ENST00000463789 [bp] 558 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MST1R-012 (ENST00000490053)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164078;r=3:49891771-49895439;t=ENST00000490053
40/1438042981921.1_20150728002301-00105-ip-10-236-191-2_428411130_0.json
41a6c616_t__MST1R_012__ENST00000490053___Flags
[Name] MST1R-009 [Transcript ID] ENST00000467110 [bp] 542 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MST1R-012 (ENST00000490053)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164078;r=3:49891771-49895439;t=ENST00000490053
40/1438042981921.1_20150728002301-00105-ip-10-236-191-2_428411130_0.json
41a6c616_t__MST1R_012__ENST00000490053___Flags
[Name] MST1R-012 [Transcript ID] ENST00000490053 [bp] 341 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MST1R-012 (ENST00000490053)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164078;r=3:49891771-49895439;t=ENST00000490053
40/1438042981921.1_20150728002301-00105-ip-10-236-191-2_428411130_0.json
aa7084b3__Gene__ERCC5__ENSG00000134899___Biotype
[Name] ERCC5-001 [Transcript ID] ENST00000355739 [bp] 5082 [Protein] 1186aa [Translation ID] ENSP00000347978 [CCDS] CCDS32004 [UniProt] P28715 [RefSeq] NM_000123 NP_000114 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Structural variation - Gene: ERCC5 (ENSG00000134899)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/StructuralVariation_Gene?db=core;g=ENSG00000134899;r=13:103497194-103528345;t=ENST00000355739
40/1438042981921.1_20150728002301-00208-ip-10-236-191-2_428071086_0.json
aa7084b3__Gene__ERCC5__ENSG00000134899___Biotype
[Name] ERCC5-202 [Transcript ID] ENST00000610537 [bp] 3660 [Protein] 1185aa [Translation ID] ENSP00000478667 [CCDS] - [UniProt] A0A087WUH0 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Structural variation - Gene: ERCC5 (ENSG00000134899)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/StructuralVariation_Gene?db=core;g=ENSG00000134899;r=13:103497194-103528345;t=ENST00000355739
40/1438042981921.1_20150728002301-00208-ip-10-236-191-2_428071086_0.json
aa7084b3__Gene__ERCC5__ENSG00000134899___Biotype
[Name] ERCC5-006 [Transcript ID] ENST00000375954 [bp] 2986 [Protein] 419aa [Translation ID] ENSP00000365121 [CCDS] - [UniProt] P28715 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Structural variation - Gene: ERCC5 (ENSG00000134899)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/StructuralVariation_Gene?db=core;g=ENSG00000134899;r=13:103497194-103528345;t=ENST00000355739
40/1438042981921.1_20150728002301-00208-ip-10-236-191-2_428071086_0.json
aa7084b3__Gene__ERCC5__ENSG00000134899___Biotype
[Name] ERCC5-201 [Transcript ID] ENST00000535557 [bp] 1125 [Protein] 232aa [Translation ID] ENSP00000442117 [CCDS] - [UniProt] P28715 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Structural variation - Gene: ERCC5 (ENSG00000134899)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/StructuralVariation_Gene?db=core;g=ENSG00000134899;r=13:103497194-103528345;t=ENST00000355739
40/1438042981921.1_20150728002301-00208-ip-10-236-191-2_428071086_0.json
aa7084b3__Gene__ERCC5__ENSG00000134899___Biotype
[Name] ERCC5-002 [Transcript ID] ENST00000472151 [bp] 635 [Protein] 43aa [Translation ID] ENSP00000436083 [CCDS] - [UniProt] F2Z2A1 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Structural variation - Gene: ERCC5 (ENSG00000134899)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/StructuralVariation_Gene?db=core;g=ENSG00000134899;r=13:103497194-103528345;t=ENST00000355739
40/1438042981921.1_20150728002301-00208-ip-10-236-191-2_428071086_0.json
aa7084b3__Gene__ERCC5__ENSG00000134899___Biotype
[Name] ERCC5-005 [Transcript ID] ENST00000472247 [bp] 710 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Structural variation - Gene: ERCC5 (ENSG00000134899)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/StructuralVariation_Gene?db=core;g=ENSG00000134899;r=13:103497194-103528345;t=ENST00000355739
40/1438042981921.1_20150728002301-00208-ip-10-236-191-2_428071086_0.json
aa7084b3__Gene__ERCC5__ENSG00000134899___Biotype
[Name] ERCC5-004 [Transcript ID] ENST00000481099 [bp] 798 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Structural variation - Gene: ERCC5 (ENSG00000134899)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/StructuralVariation_Gene?db=core;g=ENSG00000134899;r=13:103497194-103528345;t=ENST00000355739
40/1438042981921.1_20150728002301-00208-ip-10-236-191-2_428071086_0.json
aa7084b3__Gene__ERCC5__ENSG00000134899___Biotype
[Name] ERCC5-003 [Transcript ID] ENST00000375958 [bp] 596 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Structural variation - Gene: ERCC5 (ENSG00000134899)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/StructuralVariation_Gene?db=core;g=ENSG00000134899;r=13:103497194-103528345;t=ENST00000355739
40/1438042981921.1_20150728002301-00208-ip-10-236-191-2_428071086_0.json
ad397f9b_t__PDPK1_007__ENST00000492021___Biotype
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021
40/1438042989510.73_20150728002309-00109-ip-10-236-191-2_416021594_0.json
ad397f9b_t__PDPK1_007__ENST00000492021___Biotype
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021
40/1438042989510.73_20150728002309-00109-ip-10-236-191-2_416021594_0.json
ad397f9b_t__PDPK1_007__ENST00000492021___Biotype
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021
40/1438042989510.73_20150728002309-00109-ip-10-236-191-2_416021594_0.json
ad397f9b_t__PDPK1_007__ENST00000492021___Biotype
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021
40/1438042989510.73_20150728002309-00109-ip-10-236-191-2_416021594_0.json
ad397f9b_t__PDPK1_007__ENST00000492021___Biotype
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021
40/1438042989510.73_20150728002309-00109-ip-10-236-191-2_416021594_0.json
ad397f9b_t__PDPK1_007__ENST00000492021___Biotype
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021
40/1438042989510.73_20150728002309-00109-ip-10-236-191-2_416021594_0.json
ad397f9b_t__PDPK1_007__ENST00000492021___Biotype
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021
40/1438042989510.73_20150728002309-00109-ip-10-236-191-2_416021594_0.json
ad397f9b_t__PDPK1_007__ENST00000492021___Biotype
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021
40/1438042989510.73_20150728002309-00109-ip-10-236-191-2_416021594_0.json
ad397f9b_t__PDPK1_007__ENST00000492021___Biotype
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021
40/1438042989510.73_20150728002309-00109-ip-10-236-191-2_416021594_0.json
ad397f9b_t__PDPK1_007__ENST00000492021___Biotype
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021
40/1438042989510.73_20150728002309-00109-ip-10-236-191-2_416021594_0.json
ad397f9b_t__PDPK1_007__ENST00000492021___Biotype
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021
40/1438042989510.73_20150728002309-00109-ip-10-236-191-2_416021594_0.json
ad397f9b_t__PDPK1_007__ENST00000492021___Biotype
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021
40/1438042989510.73_20150728002309-00109-ip-10-236-191-2_416021594_0.json
ad397f9b_t__PDPK1_007__ENST00000492021___Biotype
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021
40/1438042989510.73_20150728002309-00109-ip-10-236-191-2_416021594_0.json
ad397f9b_t__PDPK1_007__ENST00000492021___Biotype
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021
40/1438042989510.73_20150728002309-00109-ip-10-236-191-2_416021594_0.json
ad397f9b_t__PDPK1_007__ENST00000492021___Biotype
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021
40/1438042989510.73_20150728002309-00109-ip-10-236-191-2_416021594_0.json
ad397f9b_t__PDPK1_007__ENST00000492021___Biotype
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021
40/1438042989510.73_20150728002309-00109-ip-10-236-191-2_416021594_0.json
ad397f9b_t__PDPK1_007__ENST00000492021___Biotype
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021
40/1438042989510.73_20150728002309-00109-ip-10-236-191-2_416021594_0.json
b8c44d03_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000389224
40/1438042981921.1_20150728002301-00273-ip-10-236-191-2_417701219_0.json
b8c44d03_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000389224
40/1438042981921.1_20150728002301-00273-ip-10-236-191-2_417701219_0.json
b8c44d03_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000389224
40/1438042981921.1_20150728002301-00273-ip-10-236-191-2_417701219_0.json
b8c44d03_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000389224
40/1438042981921.1_20150728002301-00273-ip-10-236-191-2_417701219_0.json
b8c44d03_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000389224
40/1438042981921.1_20150728002301-00273-ip-10-236-191-2_417701219_0.json
b8c44d03_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000389224
40/1438042981921.1_20150728002301-00273-ip-10-236-191-2_417701219_0.json
b8c44d03_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000389224
40/1438042981921.1_20150728002301-00273-ip-10-236-191-2_417701219_0.json
b8c44d03_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000389224
40/1438042981921.1_20150728002301-00273-ip-10-236-191-2_417701219_0.json
b8c44d03_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000389224
40/1438042981921.1_20150728002301-00273-ip-10-236-191-2_417701219_0.json
b8c44d03_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000389224
40/1438042981921.1_20150728002301-00273-ip-10-236-191-2_417701219_0.json
b8c44d03_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000389224
40/1438042981921.1_20150728002301-00273-ip-10-236-191-2_417701219_0.json
b8c44d03_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000389224
40/1438042981921.1_20150728002301-00273-ip-10-236-191-2_417701219_0.json
b8c44d03_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000389224
40/1438042981921.1_20150728002301-00273-ip-10-236-191-2_417701219_0.json
b8c44d03_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000389224
40/1438042981921.1_20150728002301-00273-ip-10-236-191-2_417701219_0.json
b8c44d03_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000389224
40/1438042981921.1_20150728002301-00273-ip-10-236-191-2_417701219_0.json
b8c44d03_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000389224
40/1438042981921.1_20150728002301-00273-ip-10-236-191-2_417701219_0.json
b8c44d03_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000389224
40/1438042981921.1_20150728002301-00273-ip-10-236-191-2_417701219_0.json
d0011ff9__Gene__PDPK1__ENSG00000140992___Biotype
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
d0011ff9__Gene__PDPK1__ENSG00000140992___Biotype
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
d0011ff9__Gene__PDPK1__ENSG00000140992___Biotype
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
d0011ff9__Gene__PDPK1__ENSG00000140992___Biotype
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
d0011ff9__Gene__PDPK1__ENSG00000140992___Biotype
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
d0011ff9__Gene__PDPK1__ENSG00000140992___Biotype
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
d0011ff9__Gene__PDPK1__ENSG00000140992___Biotype
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
d0011ff9__Gene__PDPK1__ENSG00000140992___Biotype
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
d0011ff9__Gene__PDPK1__ENSG00000140992___Biotype
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
d0011ff9__Gene__PDPK1__ENSG00000140992___Biotype
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
d0011ff9__Gene__PDPK1__ENSG00000140992___Biotype
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
d0011ff9__Gene__PDPK1__ENSG00000140992___Biotype
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
d0011ff9__Gene__PDPK1__ENSG00000140992___Biotype
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
d0011ff9__Gene__PDPK1__ENSG00000140992___Biotype
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
d0011ff9__Gene__PDPK1__ENSG00000140992___Biotype
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
d0011ff9__Gene__PDPK1__ENSG00000140992___Biotype
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
d0011ff9__Gene__PDPK1__ENSG00000140992___Biotype
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
f4995d5b___PDGFRB_001__ENST00000261799___Flags
[Name] PDGFRB-001 [Transcript ID] ENST00000261799 [bp] 5717 [Protein] 1106aa [Translation ID] ENSP00000261799 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS4303 [UniProt] P09619 [RefSeq] NM_002609 NP_002600 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
f4995d5b___PDGFRB_001__ENST00000261799___Flags
[Name] PDGFRB-004 [Transcript ID] ENST00000517488 [bp] 822 [Protein] 146aa [Translation ID] ENSP00000429218 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RJ14 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
f4995d5b___PDGFRB_001__ENST00000261799___Flags
[Name] PDGFRB-003 [Transcript ID] ENST00000517957 [bp] 568 [Protein] 174aa [Translation ID] ENSP00000430715 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RII0 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
f4995d5b___PDGFRB_001__ENST00000261799___Flags
[Name] PDGFRB-002 [Transcript ID] ENST00000520579 [bp] 3860 [Protein] 239aa [Translation ID] ENSP00000430026 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E5RH16 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
f4995d5b___PDGFRB_001__ENST00000261799___Flags
[Name] PDGFRB-010 [Transcript ID] ENST00000523456 [bp] 1023 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
f4995d5b___PDGFRB_001__ENST00000261799___Flags
[Name] PDGFRB-006 [Transcript ID] ENST00000519575 [bp] 712 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
f4995d5b___PDGFRB_001__ENST00000261799___Flags
[Name] PDGFRB-011 [Transcript ID] ENST00000517660 [bp] 611 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
f4995d5b___PDGFRB_001__ENST00000261799___Flags
[Name] PDGFRB-008 [Transcript ID] ENST00000520851 [bp] 406 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
f4995d5b___PDGFRB_001__ENST00000261799___Flags
[Name] PDGFRB-007 [Transcript ID] ENST00000521723 [bp] 400 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
f4995d5b___PDGFRB_001__ENST00000261799___Flags
[Name] PDGFRB-005 [Transcript ID] ENST00000520229 [bp] 738 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
f4995d5b___PDGFRB_001__ENST00000261799___Flags
[Name] PDGFRB-009 [Transcript ID] ENST00000522466 [bp] 296 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
025dd3f5_t__PARK7_002__ENST00000338639___UniProt
[Name] PARK7-001 [Transcript ID] ENST00000493678 [bp] 1088 [Protein] 189aa [Translation ID] ENSP00000418770 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt]
Q99497 V9HWC2
[ [ "Q", "9", "9", "4", "9", "7", " ", "V", "9", "H", "W", "C", "2" ], [ "K", "7", "E", "L", "W", "0" ], [ "K", "7", "E", "N", "2", "7" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-002 (ENST00000338639)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8021723-8031108;t=ENST00000338639
40/1438042981921.1_20150728002301-00064-ip-10-236-191-2_420701776_0.json
025dd3f5_t__PARK7_002__ENST00000338639___UniProt
[Name] PARK7-005 [Transcript ID] ENST00000377491 [bp] 977 [Protein] 189aa [Translation ID] ENSP00000366711 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt]
Q99497 V9HWC2
[ [ "Q", "9", "9", "4", "9", "7", " ", "V", "9", "H", "W", "C", "2" ], [ "K", "7", "E", "L", "W", "0" ], [ "K", "7", "E", "N", "2", "7" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-002 (ENST00000338639)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8021723-8031108;t=ENST00000338639
40/1438042981921.1_20150728002301-00064-ip-10-236-191-2_420701776_0.json
025dd3f5_t__PARK7_002__ENST00000338639___UniProt
[Name] PARK7-002 [Transcript ID] ENST00000338639 [bp] 949 [Protein] 189aa [Translation ID] ENSP00000340278 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] NM_001123377 NM_007262 NP_001116849 NP_009193 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt]
Q99497 V9HWC2
[ [ "Q", "9", "9", "4", "9", "7", " ", "V", "9", "H", "W", "C", "2" ], [ "K", "7", "E", "L", "W", "0" ], [ "K", "7", "E", "N", "2", "7" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-002 (ENST00000338639)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8021723-8031108;t=ENST00000338639
40/1438042981921.1_20150728002301-00064-ip-10-236-191-2_420701776_0.json
025dd3f5_t__PARK7_002__ENST00000338639___UniProt
[Name] PARK7-006 [Transcript ID] ENST00000377488 [bp] 783 [Protein] 189aa [Translation ID] ENSP00000366708 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt]
Q99497 V9HWC2
[ [ "Q", "9", "9", "4", "9", "7", " ", "V", "9", "H", "W", "C", "2" ], [ "K", "7", "E", "L", "W", "0" ], [ "K", "7", "E", "N", "2", "7" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-002 (ENST00000338639)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8021723-8031108;t=ENST00000338639
40/1438042981921.1_20150728002301-00064-ip-10-236-191-2_420701776_0.json
025dd3f5_t__PARK7_002__ENST00000338639___UniProt
[Name] PARK7-003 [Transcript ID] ENST00000377493 [bp] 795 [Protein] 169aa [Translation ID] ENSP00000466242 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt]
K7ELW0
[ [ "Q", "9", "9", "4", "9", "7", " ", "V", "9", "H", "W", "C", "2" ], [ "K", "7", "E", "L", "W", "0" ], [ "K", "7", "E", "N", "2", "7" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-002 (ENST00000338639)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8021723-8031108;t=ENST00000338639
40/1438042981921.1_20150728002301-00064-ip-10-236-191-2_420701776_0.json
025dd3f5_t__PARK7_002__ENST00000338639___UniProt
[Name] PARK7-010 [Transcript ID] ENST00000469225 [bp] 711 [Protein] 160aa [Translation ID] ENSP00000466756 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt]
K7EN27
[ [ "Q", "9", "9", "4", "9", "7", " ", "V", "9", "H", "W", "C", "2" ], [ "K", "7", "E", "L", "W", "0" ], [ "K", "7", "E", "N", "2", "7" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-002 (ENST00000338639)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8021723-8031108;t=ENST00000338639
40/1438042981921.1_20150728002301-00064-ip-10-236-191-2_420701776_0.json