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Motility has been implicated in the invasive process of Borrelia burgdorferi (Bb), the etiologic agent of Lyme disease. To identify Bb motility related genes, we used a method termed 'semi-random PCR chromosome walking' (SRPCW) to walk through a large motility gene cluster. The major advantage of this approach over other PCR walking methods is that it employs a secondary PCR amplification of cloned fragments which can be readily sequenced and analyzed. Starting with a primer specific to flgE, we identified and sequenced 14 open reading frames (ORFs) spanning 11 kb downstream of the flgE gene. The genes identified include flbD, motA, motB, fliL, fliM, fliN, fliZ, fliP, fliQ, fliR, flhB, flhA, flhF and flbE. Twelve of the deduced proteins shared extensive homology with flagellar proteins from other bacteria. The gene products and order of genes within this cluster are most similar to those of Treponema pallidum (Tp) and Bacillus subtilis (Bs). One of the unique genes identified, flbD, demonstrated homology to an ORF from the same operon of Tp. Another ORF, flbE, showed similarity to genes from both Tp and Bs. RT-PCR and primer extension analysis revealed that this gene cluster is transcribed as a single unit indicating that it is part of a large motility operon spanning more than 21 kb. Antisera to Escherichia coli and Salmonella typhimurium FliN, FliM, FlhB and FlhA reacted with proteins of the predicted molecular weights in cell lysates of Bb. The results suggest that the flagellar system is highly conserved in evolution and thus underscore the importance of motility in bacterial survival and pathogenesis. | Although researchers can access information on the entire genomic DNA sequence of typical research organisms, convenient genome walking methods in the laboratory are still needed. For the analysis of microorganisms, these methods are especially useful because the available genetic information is often scarce or limited. Many genomic walking methods are based on the polymerase chain reaction (PCR), and useful methods have been developed. This report reviews the methodologies of PCR-mediated genomic walking methods and evaluates their efficiency and usefulness to help microbiologists to select the appropriate method for each target microorganism. The concept and specific features, such as advantages and disadvantages, of five major PCR-mediated genomic walking methods (random PCR, inverse PCR, panhandle PCR, cassette PCR, and rapid amplification of genomic ends) are briefly described. The improved methods and their characteristics are listed, and a report of experimental comparison of such methods is also introduced briefly. Each of these methods has both advantages and disadvantages, and there is a trade-off between the specificity of target amplification and the ease of the method. The cassette PCR seems to be a standard method, but suitable method should be selected in consideration of the characteristics of the material. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,400 |
A β-glycosidase of a thermophile, Thermus thermophilus, belonging to the glycoside hydrolase family 1, was cloned and overexpressed in Escherichia coli. The purified enzyme (Ttβgly) has a broad substrate specificity towards β-D-glucoside, β-D-galactoside and β-D-fucoside derivatives. The thermostability of Ttβgly was exploited to study its kinetic properties within the range 25–80[emsp4 ]°C. Whatever the temperature, except around 60[emsp4 ]°C, the enzyme displayed non-Michaelian kinetic behavior. Ttβgly was inhibited by high concentrations of substrate below 60[emsp4 ]°C and was activated by high concentrations of substrate above 60[emsp4 ]°C. The apparent kinetic parameters (kcat and Km) were calculated at different temperatures. Both kcat and Km increased with an increase in temperature, but up to 75[emsp4 ]°C the values of kcat increased much more rapidly than the values of Km. The observed kinetics might be due to a combination of factors including inhibition by excess substrate and stimulation due to transglycosylation reactions. Our results show that the substrate could act not only as a glycosyl donor but also as a glycosyl acceptor. In addition, when the glucose was added to reaction mixtures, inhibition or activation was observed depending on both substrate concentration and temperature. A reaction model is proposed to explain the kinetic behavior of Ttβgly. The scheme integrates the inhibition observed at high concentrations of substrate and the activation due to transglycosylation reactions implicating the existence of a transfer subsite. | The crystal structure of thermitase, a subtilisin-type serine proteinase from Thermoactinomyces vulgaris, was determined by X-ray diffraction at 1.4 A resolution. The structure was solved by a combination of molecular and isomorphous replacement. The starting model was that of subtilisin BPN' from the Protein Data Bank, determined at 2.5 A resolution. The high-resolution refinement was based on data collected using synchrotron radiation with a Fuji image plate as detector. The model of thermitase refined to a conventional R factor of 14.9% and contains 1997 protein atoms, 182 water molecules and two Ca ions. The tertiary structure of thermitase is similar to that of the other subtilisins although there are some significant differences in detail. Comparison with subtilisin BPN' revealed two major structural differences. The N-terminal region in thermitase, which is absent in subtilisin BPN', forms a number of contacts with the tight Ca2+ binding site and indeed provides the very tight binding of the Ca ion. In thermitase the loop of residues 60 to 65 forms an additional (10) beta-strand of the central beta-sheet and the second Ca2+ binding site that has no equivalent in the subtilisin BPN' structure. The observed differences in the Ca2+ binding and the increased number of ionic and aromatic interactions in thermitase are likely sources of the enhanced stability of thermitase. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,401 |
To establish a lysogenic lifestyle, the temperate bacteriophage φC31 integrates its genome into the chromosome of its Streptomyces host, by site-specific recombination between attP (the attachment site in the phage DNA) and attB (the chromosomal attachment site). This reaction is promoted by a phage-encoded serine recombinase Int. To return to the lytic lifestyle, the prophage excises its DNA by a similar Int-mediated reaction between the recombinant sites flanking the prophage, attL and attR. φC31 Int has been developed into a popular experimental tool for integration of transgenic DNA into the genomes of eukaryotic organisms. However, until now it has not been possible to use Int to promote the reverse reaction, excision. In many other phages, the presence of a recombination directionality factor (RDF) protein biases the phage-encoded integrase towards prophage excision, whereas absence of the RDF favours integration; but the φC31 RDF had proved elusive. In this issue of Molecular Microbiology, Khaleel et al. (2011) report the identification and purification of the φC31 RDF, and show that it both promotes excision and inhibits integration by direct protein-protein interactions with Int itself. | Summary ::: Most site-specific recombinases fall into one of two families, based on evolutionary and mechanistic relatedness. These are the tyrosine recombinases or λ integrase family and the serine recombinases or resolvase/invertase family. The tyrosine recombinases are structurally diverse and functionally versatile and include integrases, resolvases, invertases and transposases. Recent studies have revealed that the serine recombinase family is equally versatile and members have a variety of structural forms. The archetypal resolvase/invertases are highly regulated, only affect resolution or inversion and they have an N-terminal catalytic domain and a C-terminal DNA binding domain. Phage-encoded serine recombinases (e.g. φC31 integrase) cause integration and excision with strictly controlled directionality, and have an N-terminal catalytic domain but much longer C-terminal domains compared with the resolvase/invertases. This high molecular weight group also contains transposases (e.g. TnpX from Tn4451). Other transposases, which belong to a third structurally different group, are similar in size to the resolvase/invertases but have the DNA binding domain N-terminal to the catalytic domain (e.g. IS607 transposase). These three structural groups represented by the resolvase/invertases, the large serine recombinases and relatives of IS607 transposase correlate with three major groupings seen in a phylogeny of the catalytic domains. These observations indicate that the serine recombinases are modular and that fusion of the catalytic domain to unrelated sequences has generated structural and functional diversity. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,402 |
The geographic distribution,biological and ecological characteristics,reproduction technique,economic value and utilization etc of Magnolia sieboldii are introduced.To counter the problems existing in utilization and research,some strategies on conservation and utilization of Magnolia sieboldii are put forward. | Magnolia sieboldii K. Koch (Magnoliaceae) is a tree species with high landscaping value, whose resource has been declining due to unreasonable exploitation. In this study, we sequenced, assembled and annotated the complete chloroplast (cp) genome of M. sieboldii. The length of M. sieboldii complete cp genome was 160,274 bp, with a typical quadripartite structure comprising a pair of inverted repeat regions (IRs; 26,588 bp), a large single copy region (LSC; 88,267 bp) and a small single copy region (SSC; 18,831 bp). The whole cp genome contained 111 unique genes, including 78 protein-coding genes (PCGs), 29 transfer RNA (tRNA) genes and four ribosomal RNA (rRNA) genes. In addition, 17 genes in IRs were duplicated. The overall CG content was 39.2%. The maximum likelihood (ML) phylogenetic analysis indicated that M. sieboldii was relatively closed to the M. officinalis and M. tripetala. Our research would provide a valuable genetic resource for M. sieboldii. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,403 |
Summary: We have determined the nucleotide sequence of a 1159 bp DNA fragment containing the spoVE locus of Bacillus subtilis. The locus contained a single open reading frame of 293 codons. On the basis of the predicted amino acid sequence, the product of the spoVE gene is believed to be a protein with an M ::: r of 31539. The amino-terminal portion of the spoVE gene was used to construct a translational fusion with the lacZ’ gene. The hybrid spoVE–lacZ’ gene was shown to be expressed in Escherichia coli and, therefore, it seems reasonable to conclude that the proposed open reading frame for the spoVE gene does indeed function in vivo. | Factors that affect the probability of genetic transformation of Escherichia coli by plasmids have been evaluated. A set of conditions is described under which about one in every 400 plasmid molecules produces a transformed cell. These conditions include cell growth in medium containing elevated levels of Mg2+, and incubation of the cells at 0 degrees C in a solution of Mn2+, Ca2+, Rb+ or K+, dimethyl sulfoxide, dithiothreitol, and hexamine cobalt (III). Transformation efficiency declines linearly with increasing plasmid size. Relaxed and supercoiled plasmids transform with similar probabilities. Non-transforming DNAs compete consistent with mass. No significant variation is observed between competing DNAs of different source, complexity, length or form. Competition with both transforming and non-transforming plasmids indicates that each cell is capable of taking up many DNA molecules, and that the establishment of a transformation event is neither helped nor hindered significantly by the presence of multiple plasmids. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,404 |
Isolated intact caps of animal blastomeres, obtained from either 8- or 16-cell embryos, differentiate as swollen ectodermal vesicles. These findings agree with earlier studies demonstrating that mesomeres contribute only to larval ectoderm during normal development. In contrast, we find that pairs of mesomeres isolated from 16-cell embryos can differentiate endodermal and mesenchymal cells in a substantial number of cases (23%). Thus, mesomeres have a greater developmental potential than is realized during normal development. Further results support hypotheses that graded distributions of morphogenetic determinants exist within these embryos, since the extent of differentiation of isolated mesomeres is related to the relative position of the third cleavage plane along the animal-vegetal axis. When the third cleavage plane is subequatorial and the resulting animal blastomeres inherit a fraction of the vegetal hemisphere, more cases (39%) differentiate endodermal and mesenchymal cell types. A significant number of mesomere pairs (9-14%), however, can still differentiate endodermal and mesenchymal cells when the mesomeres are formed within the animal hemisphere. Thus, putative vegetal morphogenetic determinants may extend into the animal hemisphere in some cases. Further results indicate a temporal restriction in the developmental potential of mesomeres or mesomere progenitor cells since their differentiative capability is greater if they are isolated earlier during development. Aggregates of isolated mesomere pairs also display a decreased developmental potential when compared to isolated mesomere pairs. These results suggest that associations with adjacent cells (vegetal cells as well as adjacent mesomeres) restrict the development of mesomeres between third and sixth cleavages. | Signals from micromere descendants play a crucial role in sea urchin development. In this study, we demonstrate that these micromere descendants express HpTb, a T-brain homolog of Hemicentrotus pulcherrimus. HpTb is expressed transiently from the hatched blastula stage through the mesenchyme blastula stage to the gastrula stage. By a combination of embryo microsurgery and antisense morpholino experiments, we show that HpTb is involved in the production of archenteron induction signals. However, HpTb is not involved in the production of signals responsible for the specification of secondary mesenchyme cells, the initial specification of primary mesenchyme cells, or the specification of endoderm. HpTb expression is controlled by nuclear localization of beta-catenin, suggesting that HpTb is in a downstream component of the Wnt signaling cascade. We also propose the possibility that HpTb is involved in the cascade responsible for the production of signals required for the spicule formation as well as signals from the vegetal hemisphere required for the differentiation of aboral ectoderm. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,405 |
Genetic characterization of omnipotent nonsense-suppressors sup 1 and sup 2 in yeast originally suggested that they code for termination factors, but their role in the control of translational fidelity and their effect on other ribosomal properties seemed to indicate that their products are ribosomal proteins. However, recent sequence data demonstrated that one of them ( sup 2) is highly homologous to an elongation factor gene. What is the function of the polypeptide products coded for by these genes and the reasons for these contradictions? | Au sujet des erreurs et des changements de lecture du code Genetique Universel, reprise et compte rendu des connaissances actuelles (338 references). Discussion sur les erreurs faux-sens, les mecanismes de terminaison et de decalages de lecture et les moyens dont dispose la cellule pour controler et s'accommoder de ces erreurs | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,406 |
Bacteriorhodopsin (BR), which transports protons out of the cell in a light-driven process, is one of the best-studied energy-transducing proteins. However, a consensus on the exact molecular mechanism has not been reached. Matters are complicated by two experimental facts. First, recent results using BR mutants (BR-D85T) and the homologous protein sensory rhodopsin I demonstrate that the vectoriality of active proton transport may be reversed under appropriate conditions. Second, in BR-D85T as well as in the homologous halorhodopsin, protons and chloride ions compete for transport; e.g. the same molecule may transport either a positive or a negative ion. To rationalize these results, we propose a general model for ion translocation by bacterial rhodopsins which is mainly based on two assumptions. First, the isomerization state of the retinylidene moiety governs the accessibility of the Schiff base in the protein; e.g. all-trans, 15-anti, and 13-cis-15-anti direct the Schiff base to extracellular and cytoplasmic accessibility, respectively, but change in accessibility (called the "switch") is a time-dependent process in the millisecond time range. A light-induced change of the isomerization state induces not only a change in accessibility but also an ion transfer reaction. Second, we propose that these two processes are kinetically independent, e.g. that relative rate constants in a given molecule determine which process occurs first, ultimately defining the vectoriality of active transport. | The molecular changes during the photoreaction of halorhodopsin from Natronobacterium pharaonis have been monitored by low-temperature static and by time-resolved step-scan Fourier transform infrared difference spectroscopy. In the low-temperature L spectrum anions only influence a band around 1650 cm(-1), tentatively assigned to the C=N stretch of the protonated Schiff base of L. The analysis of the time-resolved spectra allows to identify the four states: K, L(1), L(2), and O. Between L(1) and L(2), only the apoprotein undergoes alterations. The O state is characterized by an all-trans chromophore and by rather large amide I spectral changes. Because in our analysis the intermediate containing O is in equilibrium with a state indistinguishable from L(2), we are unable to identify an N-like state. At very high chloride concentrations (>5 M), we observe a branching of the photocycle from L(2) directly back to the dark state, and we provide evidence for direct back-isomerization from L(2). This branching leads to the reported reduction of transport activity at such high chloride concentrations. We interpret the L(1) to L(2) transition as an accessibility change of the anion from the extracellular to the cytosolic side, and the large amide I bands in O as an indication for opening of the cytosolic channel from the Schiff base toward the cytosolic surface and/or as indication for changes of the binding constant of the release site. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,407 |
The pathogenicity of Bacillus sphaericus strain 1593 was tested against laboratory-reared larvae of four local species of mosquitoes of public health importance in Malaysia; Aedes aegypti, Anopheles balabacensis, Mansonia uniformis and Culex quinquefasciatus. The bacteria was shake-cultured at 28 +/- 1 degrees C for three days, using Glucose-Yeast Extract Salts medium. After which, the spores and vegetative cells were harvested and stored at 4 degrees C before use. Conditions for bioassays were mean temperature of 25 +/- 1 degrees C and relative humidity 65 +/- 5.0. Twenty third-instar larvae of each species were assayed in 90 ml of diluted spore solution. Each concentration and a control were replicated three times for each bioassay. Larval mortalities at 24 hours and 48 hours were taken and analyzed through Probit Analysis using a computer (IBM 370). LC50 values after 48 hours of exposure showed an increasing order of larval susceptibility as follows: Ae. aegypti (417.70 x 10(4)), An. balabacensis (45.84 x 10(4)), Ma. uniformis (18.23 x 10(4)) and Cx. quinquefasciatus (4.14 x 10(4) spores/ml). With the ability to kill 90% of the Cx. quinquefasciatus larvae tested with just a concentration of 10(5) spores/ml, B. sphaericus (strain 1593) has shown good potential as a biocontrol agent for this species of mosquito. | Bacillus thuringiensis var. israelensis (B.t.i.), HD-968-S-1983, and a primary powder of Bacillus sphaericus 2362 were assayed against Mansonia titillans and Ma. dyari. The susceptibility of the 2 species to the individual bacterial toxins was similar. The B.t.i. LC50 values were 50.5 micrograms/liter for Ma. dyari and 54.7 micrograms/liter for Ma. titillans; the B. sphaericus LC50 values were 339.0 micrograms/liter and 347.2 micrograms/liter, respectively. The log dose-probit mortality lines were parallel for both target species. The potency of B. sphaericus relative to B.t.i. was 0.15 for Ma. dyari and 0.16 for Ma. titillans. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,408 |
In this work the direct self-calibration of a camera from three views of a unknown planar structure is proposed. Three views of a plane are sufficient to determine the plane structure, the view's positions and orientations and the camera's focal length. This is a non-linear optimizac tion problem that is solved using the heuristic Differential Evolution. Once an initial structure is obtained, the bundle adjustment can be used to incorporate more views and estimate other camera intrinsic param- eters and possible lens distortion. This new self-calibration method is tested with real data. | With the increasing power of computers, the amount of data that can be processed in small periods of time has grown exponentially, as has the importance of classifying large-scale data efficiently. Support vector machines have shown good results classifying large amounts of high-dimensional data, such as data generated by protein structure prediction, spam recognition, medical diagnosis, optical character recognition and text classification, etc. Most state of the art approaches for large-scale learning use traditional optimization methods, such as quadratic programming or gradient descent, which makes the use of evolutionary algorithms for training support vector machines an area to be explored. The present paper proposes an approach that is simple to implement based on evolutionary algorithms and Kernel-Adatron for solving large-scale classification problems, focusing on protein structure prediction. The functional properties of proteins depend upon their three-dimensional structures. Knowing the structures of proteins is crucial for biology and can lead to improvements in areas such as medicine, agriculture and biofuels. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,409 |
Behcet's syndrome, a multisystem disorder, is characterized by recurrent oral and genital aphthous ulcerations, eye lesions, and skin changes. Other manifestations, although rare, may affect the nervous, gastrointestinal, or loco- motor system, as well as veins and arteries. Vascular lesions occur in approxi mately 30% of reported cases. Although thrombosis in the larger veins is frequent, arterial thrombosis is somewhat less likely to occur. Only a few cases of arterial aneurysm have been documented in the literature.This report describes a patient who had suffered from Behcet's syndrome for fifteen years and in whom a complete obstruction of the inferior vena cava was demonstrated. An aortailiac bypass was performed successfully, and the patient had had a good clinical recovery at long-term follow-up. | Behqet's disease is a rare, multisystem disorder characterized by widespread vasculitis on both the arterial and venous side of the circulation. The authors report a very rare case of associated leaking abdominal aortic aneurysm and Budd-Chiari syndrome secondary to inferior vena cava occlusion in a 25-year-old woman with complicated Behqet's disease. To our knowledge, this is the fourth case to be reported in the English literature with such a combination. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,410 |
Sand water content had the serious influence on the survival of larvae and one-day-old pupae of oriental fruit fly,Bactrocera dorsalis.Excessive water loss was an important reason,could cause the prepupation and pupal mortality.In the desiccation condition,only 11.67% of the 3~(rd) instar larvae could survive and develop to emerge.The mortality of oneday-old pupae kept inside a desiccation container for 9 days reached to 75.47%.Under the saturated moist condition,none of larvae and pupae could survive.It was indicated that high sand water content had a negative effect on the pupae. The survival rates of three-day-old and six-day-old pupae were 39% and 41% respectively under the high sand water content condition(RH 80%).And the abnormal rates of adults and six-day-old pupae were significantly high under the condition of desiccation and high sand water content. | Bactrocera minax, one of the most devastating citrus pests in Asia, has two developmental stages (mature larva and pupa) that complete their life cycle in the soil. Currently, southern China has a climate with abundant autumn rains, and soil moisture can be a major factor affecting the survival of larvae and pupae of B. minax. In the present study, we evaluated the effects of water immersion and high soil moisture content on the development of mature larvae and pupae of B. minax. When immersed in water for 1 d, 100% of mature larvae of B. minax were knocked out. When larvae were immersed for less than 6 d, however, more than 92% of knocked-out larvae recovered within 24 h. The days of water immersion with 50% and 90% recovery ratios (indicated as RD50 and RD90) were 10.3 d and 6.4 d, respectively. When larvae were immersed less than 6 d, the mortality ratios of larvae were not significantly different from those that were not immersed at all. The days of immersion causing 50% and 90% mortality of larvae (MD50 and MD90, respectively) were 7.6 d and 11.1 d, respectively. The pupation ratios of larvae were also observed to be not significantly different compared to non-immersion, and the days of immersion causing 50% and 90% pupation (PD50 and PD90, respectively) were 6.6 d and 0.8 d, respectively. Larval respiration rates were reduced after water immersion as a strategy for larval survival. High water content was not detrimental to pupae of B. minax. Adult emergence did not significantly decrease in soil with high water content, even though pupae were under those conditions for 161–175 d. The respiration rates of pupae were lower in soil with different moisture levels and were not significantly different, which ensured the survival of pupae in high water content. Reduced respiration rate is a strategy for survival of larvae and pupae, and remarkable tolerance to high moisture conditions could explain the high rate of spread and geographical distribution of B. minax. The results of this study provide a reference for the occurrence and control of B. minax. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,411 |
This study was conducted to evaluate the insecticidal effects of ethyl formate (EF), methyl bromide (MB), and phosphine (PH3) fumigants against PH3-susceptible and -resistant strains of the rice weevil (Sitophilus oryzae), a major rice pest. The highest lethal concentration time 50 (LCt50) values of the PH3-susceptible strains were 255.797, 21.104, and 6.171 mg h L-1 for EF, MB, and PH3, respectively, at pupal stage. The highest LCt50 values of the PH3-resistant strains were 149.028 and 48.170 mg h L-1 for EF and PH3, respectively, at late larval stage, and 43.520 mg h L-1 for MB at pupal stage. In comparison to the susceptible strains, the PH3-resistant strain collected in South Korea had a resistance level 4 to 56 times higher. Use of the major quarantine fumigants EF, MB, and PH3 indicated the existence of PH3-resistant rice weevils in South Korea for the first time. | All developmental stages of 13 strains of six species of stored product beetles, including 7 strains known to be resistant to phosphine as adults, were exposed to the gas at 15° and 25°C in fumigation chambers. The strains resistant to phosphine in the adult stage were found to have resistant immature stages, and in all the resistant strains the most tolerant stage in the life cycle was the pupa. All stages of susceptible strains of Oryzaephilus surinamensis, Tribolium castaneum, Cryptolestes ferrugineus and Rhyzopertha dominica could be controlled by 4 days exposure to phosphine at 15° and 25°C, although the dosage rate required for the latter two species at 15°C was 2 g m−3. In contrast 10–12 days exposure at this dose were required for the control of pupal Sitophilus granarius and S. oryzae at 15°C. Immature stages of resistant strains of each species showed higher levels of tolerance when compared with susceptible strains. For O. surinamensis and T. castaneum control was achieved by 4–6 days exposure, but the other species required 8–10 days exposure at 25°C, and single individuals of resistant R. dominica and S. oryzae strains survived a 14 day exposure at a dose of 2 g m−3 phosphine at 15°C. Results indicate that for resistant as well as susceptible strains, time of exposure to phosphine was a more critical factor of dosage than concentration. However, for control of the resistant insects it was also found necessary to achieve high dosage levels, which must be maintained for long periods. It is unlikely that either of these objectives could be achieved in a commercial treatment using current practices. Thus effective control of both susceptible and resistant insects will only be possible if structures used for storing grain are made more gas-tight, or if bulks of grain stored on the floor are effectively sealed using suitable impermeable sheeting secured to the floor. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,412 |
Legionella pneumophila is the predominant cause of Legionnaires disease, a severe and potentially fatal form of pneumonia. Recently, we identified an ecto-nucleoside triphosphate diphosphohydrolase (NTPDase) from L. pneumophila, termed Lpg1905, which enhances intracellular replication of L. pneumophila in eukaryotic cells. Lpg1905 is the first prokaryotic member of the CD39/NTPDase1 family of enzymes, which are characterized by the presence of five apyrase conserved regions and the ability to hydrolyze nucleoside tri- and diphosphates. Here we examined the substrate specificity of Lpg1905 and showed that apart from ATP and ADP, the enzyme catalyzed the hydrolysis of GTP and GDP but had limited activity against CTP, CDP, UTP, and UDP. Based on amino acid residues conserved in the apyrase conserved regions of eukaryotic NTPDases, we generated five site-directed mutants, Lpg1905E159A, R122A, N168A, Q193A, and W384A. Although the mutations E159A, R122A, Q193A, and W384A abrogated activity completely, N168A resulted in decreased activity caused by reduced affinity for nucleotides. When introduced into the lpg1905 mutant strain of L. pneumophila, only N168A partially restored the ability of L. pneumophila to replicate in THP-1 macrophages. Following intratracheal inoculation of A/J mice, none of the Lpg1905 mutants was able to restore virulence to an lpg1905 mutant during lung infection, thereby demonstrating the importance of NTPDase activity to L. pneumophila infection. Overall, the kinetic studies undertaken here demonstrated important differences to mammalian NTPDases and different sensitivities to NTPDase inhibitors that may reflect underlying structural variations. | The detection of Legionella pneumophila in environmental and clinical samples is frequently performed by PCR amplification of the mip and/or 16S rRNA genes. Combined with DNA sequencing, these two genetic loci can be used to distinguish different species of Legionella and identify L. pneumophila. However, the recent Legionella genome sequences have opened up hundreds of possibilities for the development of new molecular targets for detection and diagnosis. Ongoing comparative genomics has the potential to fine tune the identification of Legionella species and serogroups by combining specific and general genetic targets. For example, the coincident detection of LPS biosynthesis genes and virulence genes may allow the differentiation of both pathogen and serogroup without the need for nucleotide sequencing. We tested this idea using data derived from a previous genomic subtractive hybridization we performed between L. pneumophila serogroup 1 and Legionella micdadei. Although not yet formally tested, these targets serve as an example of how comparative genomics has the potential to improve the scope and accuracy of Legionella molecular detection if embraced by laboratories undertaking Legionella surveillance | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,413 |
We used a comparative genomic approach to identify putative cis-acting regulatory sequences of the zebrafish hoxb3a and hoxb4a genes. We aligned genomic sequences spanning the clustered Hoxb1 to Hoxb5 genes from pufferfish, mice, and humans with the zebrafish hoxba and hoxbb cluster sequences. We identified multiple blocks of conserved sequences in non-coding regions within and surrounding the Hoxb3/b4 gene locus; a subset of these blocks are conserved in the zebrafish hoxbb cluster, despite loss of hoxb3/b4 genes. Overall, we find that the architecture of the Hoxb3/b4 loci and of the conserved sequence elements is very similar in teleosts and mammals. Our analyses also revealed two alternative transcripts of the zebrafish hoxb3a gene and an exon sequence unusually located 10 kb upstream of adjacent hoxb4a; an equivalent murine Hoxb3 exon has not yet been confirmed. We show that many of the Hoxb3/b4 conserved non-coding sequences correlate with functional neural enhancers previously described in the mouse. Further, within the conserved non-coding sequences we have identified binding sites for transcription factors, including Kreisler/Valentino, Krox20, Hox, and Pbx, some of which had not been previously described for the mouse. Finally, we demonstrate that the regulatory sequences of zebrafish hoxa3a are divergent with respect to the mouse ortholog Hoxa3, or the paralog hoxb3a. Despite limited conservation of regulatory sequences, zebrafish hoxa3a and hoxb3a genes share very similar expression profiles. J. Exp. Zool. (Mol. Dev. Evol.) 302B: 147–164, 2004. © 2004 Wiley-Liss, Inc. | The duplication-degeneration-complementation (DDC) model predicts that subfunctionalization of duplicated genes is a common mechanism for their preservation. The additional Hox complexes of teleost fish constitute a good system in which to test this hypothesis. Zebrafish have two hoxb complexes, with two hoxb5 genes, hoxb5a and hoxb5b, the expression patterns of which suggest subfunctionalization of an ancestral hoxb5 gene. We characterized conserved non-coding elements (CNEs) near the zebrafish hoxb5 genes. One CNE, J3, is only retained in the hoxb5a locus, whereas the others, J1 and J2, are present in both hoxb5 loci. When tested individually, the enhancer activity of individual CNEs, including J3, extensively overlapped and did not support a role in subfunctionalization. By contrast, reporter transgene constructs encompassing multiple CNEs were able to target reporter gene expression to unique domains of hoxb5a and hoxb5b expression. The deletion of J3 from the hoxb5a locus resulted in expression that approached that of hoxb5b, whereas its insertion in the hoxb5b locus increased reporter expression and rendered it more similar to that of hoxb5a. Our results highlight the importance of interactions between CNEs in the execution of complementary subfunctions of duplicated genes. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,414 |
Epstein-Barr virus-specific CD4+ T cells could be involved in the pathogenesis of multiple sclerosis, provided they can gain entry to the intrathecal compartment. The authors have previously demonstrated that cerebrospinal fluid T cells from multiple sclerosis patients recognize autologous Epstein-Barr virus-transformed B cells. They now report that CD4+ T cells specific for the Epstein-Barr virus DNA polymerase peptide EBV 627-641 were present in the cerebrospinal fluid from one of two multiple sclerosis patients, and that a high proportion of these CD4+ T cells cross-recognized an immunodominant myelin basic protein peptide, MBP 85-99. In the observed patient, the proportion of EBV 627-641-specific CD4+ T cells seemed to exceed 1/10,000 in cerebrospinal fluid, compared to approximately 1/100,000 in blood. These findings prove that Epstein-Barr-virus specific CD4+ T cells can gain access to the intrathecal compartment, and suggest that Epstein-Barr virus-specific CD4+ T cells could target myelin basic protein in the central nervous system. | It is commonly accepted that a high level of antigen specificity is a feature of T-cell activation. However, here, Don Mason argues that a comprehensive response to foreign antigens requires that T cells are widely crossreactive, such that one cell reacts productively with approximately 10 6 different MHC-associated minimal peptide epitopes. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,415 |
Experiments in the Coastal Western Hemlock (CWH) biogeoclimatic zone on the British Columbia (BC) coast and the Interior Douglas-fir (IDF) biogeoclimatic zone in the BC interior revealed pronounced differences in the effect of six-carbon green leaf volatiles on the response by striped ambrosia beetles, Trypodendron lineutum to multiple funnel traps baited with the aggregation pheromone lineatin. In the IDF zone, four green leaf alcohols [1-hexanol, (E)-2-hexen-1-ol, (Z)-2-hexen-1-ol, and (Z)-3-hexen-1-ol], released alone or in a quaternary blend at ca. 4 mg/24 hr/compound, caused a 63–78% reduction in trap catches. Two aldehydes, hexanal and (E)-2-hexenal, released together at ca. 13.0 mg/24 hr/compound were weakly disruptive in one of two experiments. Conversely, in the CWH zone, the two aldehydes together caused a slight, but significant, increase in the response over that to lineatin in one of two experiments, and the blend of all four alcohols caused only weak disruption of response in one of two experiments. None of the alcohols released alone was bioactive. These results may reflect adaptations that ensure accurate host location in the two ecological zones. In the CWH zone, T. lineatum attacks conifer logs almost exclusively, and surrenders the cut or broken stump habitat to Gnathotrichus spp. In the IDF zone, T. lineatum readily attacks the base of trees killed by bark beetles or fire and may utilize green leaf alcohols to detect and avoid the vertical silhouettes represented by nonhost angiosperms such as black cottonwood and trembling aspen. | Nonhost angiosperm volatiles and verbenone were tested for their ability to disrupt the response of western pine beetle, Dendroctonus brevicomis LeConte (Coleoptera: Scolytidae), to attractant-baited multiple funnel traps. Verbenone significantly reduced attraction; however, no difference was observed between 4 and 50 mg/24-h release rates. Combinations of six bark volatiles (benzyl alcohol, benzaldehyde, trans-conophthorin, guaiacol, nonanal, and salicylaldehyde), three green leaf volatiles [(E)-2-hexenal, (E)-2-hexen-1-ol, and (Z)-2-hexen-1-ol], and the nine compounds combined did not significantly reduce D. brevicomis response to attractant-baited traps. However, a significant effect was observed when the bark and green leaf volatiles were combined with verbenone. The nine nonhost angiosperm volatiles (NAVs) significantly augmented the effect of both release rates of verbenone, reducing trap catches to levels significantly below that of either release rate of verbenone alone. trans-Conophthorin, a compound reported to have behavioral activity in a number of other scolytids, was not critical to the efficacy of our NAV blend. Our results suggest that the addition of nonhost angiosperm volatiles to verbenone could be important for developing successful semiochemical-based management techniques for D. brevicomis. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,416 |
In most animals, the brain controls the body via a set of descending neurons (DNs) that traverse the neck and terminate in post-cranial regions of the nervous system. This critical neural population is thought to activate, maintain and modulate locomotion and other behaviors. Although individual members of this cell class have been well-studied across species ranging from insects to primates, little is known about the overall connectivity pattern of DNs as a population. We undertook a systematic anatomical investigation of descending neurons in the fruit fly, Drosophila melanogaster, and created a collection of over 100 transgenic lines targeting individual cell types. Our methods allowed us to describe the morphology of roughly half of an estimated 400 DNs and create a comprehensive map of connectivity between the sensory neuropils in the brain and the motor neuropils in the ventral nerve cord. Like the vertebrate spinal cord, our results show that the fly nerve cord is a highly organized, layered system of neuropils, an organization that reflects the fact that insects are capable of two largely independent means of locomotion – walking and fight – using distinct sets of appendages. Our results reveal the basic functional map of descending pathways in flies and provide tools for systematic interrogation of sensory-motor circuits. | Coordinated activity across networks of neurons is a hallmark of both resting and active behavioral states in many species, including worms, flies, fish, mice and humans1–5. These global patterns alter energy metabolism in the brain over seconds to hours, making oxygen consumption and glucose uptake widely used proxies of neural activity6,7. However, whether changes in neural activity are causally related to changes in metabolic flux in intact circuits on the sub-second timescales associated with behavior, is unknown. Moreover, it is unclear whether transitions between rest and action are associated with spatiotemporally structured changes in neuronal energy metabolism. Here, we combine two-photon microscopy of the entire fruit fly brain with sensors that allow simultaneous measurements of neural activity and metabolic flux, across both resting and active behavioral states. We demonstrate that neural activity drives changes in metabolic flux, creating a tight coupling between these signals that can be measured across large-scale brain networks. Further, these studies reveal that the initiation of even minimal behavioral movements causes large-scale changes in the pattern of neural activity and energy metabolism, revealing unexpected structure in the functional architecture of the brain. The relationship between neural activity and energy metabolism is likely evolutionarily ancient. Thus, these studies provide a critical foundation for using metabolic proxies to capture changes in neural activity and reveal that even minimal behavioral movements are associated with changes in large-scale brain network activity. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,417 |
A bacterial artificial chromosome (BAC) library from the dihaploid melon line 'PIT92' was constructed with a 6 times coverage of the haploid melon genome. A contig of four BACs around the MRGH63 resistance gene homologue fragment was created. The complete sequence of a 117-kb BAC clone allowed to determine two clearly defined regions, the first one containing a cluster of three resistance gene homologues. Separated by a retrotransposon, that contains large long terminal repeats, the second region presents a group of genes with a conserved distribution in two regions of the Arabidopsis genome. The detailed analysis of this region provides a description of the gene structure and the presence of repetitive sequences in a defined fragment of the genome of Cucumis melo. | Angiosperm genomes show tremendous variability in genome size and chromosome number. Nevertheless, comparative genetic mapping has revealed genome collinearity of closely related species. Sequence-based comparisons were used to assess the conservation of gene arrangements. Numerous small rearrangements, insertions/deletions, duplications, inversions and translocations have been detected. Importantly, comparative sequence analyses have unambiguously shown micro-collinearity of distantly related plant species. Duplications and subsequent gene loss have been identified as a particular important factor in the evolution of plant genomes. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,418 |
Despite the remarkable advances in the isolation, analysis, reconstruction,and methods of introducing new genes into organisms, the ultimate fate of natural and manipulated genetic material is dependent on the survival, establishment, and growth of the organismal vectors (usually microbes) that house the genetic material in the natural habitats into which the vectors are introduced. Survival, establishment, and growth are, in turn, dependent on the genetic constitution of the microbes and on the physical (temperature, pressure, electromagnetic radiation, surfaces, spatial relations), chemical (carbonaceous substrates, ironganic nutrients, growth factors, ionic composition, available water, pH, oxidation-reduction potential, gaseous composition, toxicants), and biological (characteristics of and positive and negative interactions between microbes) factors of the various habitats (Fig. 1). Limitations of space preclude a detailed discussion of and an extensive bibliography to these ecological factors and to the genetical aspects of this report. Consequently, reference is made to reviews wherever possible. | Several strains ofEscherichia coli, containing plasmids that ranged in size from 3.9 to 96 kb, were inoculated into soil at 104–105 cells/g soil. The initial total bacterial population was approximately 5×107 cells/g soil, and the gram-negative bacterial population ranged from 105 to 106 cells/g soil. Changes in various populations were followed on selective media, and as few as 1 to 20 introduced colony forming units (CFU)/g soil could be detected. The introduced strains either remained at approximately 104 CFU/g soil or dropped to undetectable levels during a 28-day incubation, depending on the host strain but not on the type or size of the plasmid. The decline of plasmid-containing strains was less rapid than that of the plasmidless hosts in the two host (PRC487 and χ1666) and host-plasmid systems (PRC487[pACYC175] and χ1666[pESO19]) that were compared. The addition of nutrients, initially or during the incubation, resulted in an increase in all bacteria and decreased the rate of decline of introduced strains. Some plasmid-containing strains could not be recovered from soil by direct plating on selective media but could be recovered after transfer from nonselective isolation media to selective media. These laboratory-cultured strains apparently became so debilitated in soil that they could not grow directly on antibiotic-containing media without resuscitation on a less stressful medium. With the exception of the χ1666(pESO19) system, there appeared to be no loss of the plasmids in soil. These results indicated that the survival of some genetically engineered (i.e., plasmid-containing) bacteria in soil is primarily a function of the bacterial strain and not of the contained plasmid and is influenced by the nutritional state of the soil. No transfer of plasmids to indigenous bacteria was apparent in these studies. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,419 |
The capsular polysaccharide antigen from Neisseria meningitidis serogroup 29-e contains equimolar quantities of 2-acetamido-2-deoxy-D-galactose and 3-deoxy-D-manno-octulosonic acid (KDO), the latter of which is rarely found in biopolymers other than lipopolysaccharides. Carbon-13 nuclear mangetic resonance in conjunction with other chemical data indicated that the polysaccharide is composed of an alternating sequence of these two residues, the linkages being at C-3 of galactosamine and C-7 of KDO in the alpha-D and beta-D configuration, respectively. The native 29-e polysaccharide is O-acetylated, the O-acetyl groups being located at C-4 and C-5 of the KDO residues. Assignments of signals in the 13C nuclear magnetic resonance spectrum of the 29-e polysaccharide were made by consideration of those in the spectra of the monomer models, which necessitated the first recorded syntheses of methyl-alpha- and beta-D-3-deoxy-manno-octulopyranosonic acid. Like the methyl alpha- and beta-D-ketosides of sialic acid (Na+ salts), the equivalent methyl alpha- and beta-D-ketosides of KDO exhibit large chemical shift differences in the exocyclic C-8 position dependent on anomeric configuration. This can again be attributed to hydrogen bonding between the axial carboxylate group of the methyl beta-D anomer of KDO (C1 conformation) and the primary hydroxyl group at C-8. This phenomenon is also exhibited by the beta-D-linked KDO units of the 29-e polysaccharide. | Recent evidence indicates that Kingella kingae produces a polysaccharide capsule. In an effort to determine the composition and structure of this polysaccharide capsule, in the current study we purified capsular material from the surface of K. kingae strain 269–492 variant KK01 using acidic conditions to release the capsule and a series of steps to remove DNA, RNA, and protein. Analysis of the resulting material by gas chromatography and mass spectrometry revealed N-acetyl galactosamine (GalNAc), 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo), and galactose (Gal). Further analysis by NMR demonstrated two distinct polysaccharides, one consisting of GalNAc and Kdo with the structure →3)-β-GalpNAc-(1→5)-β-Kdop-(2→ and the other containing galactose alone with the structure →5)-β-Galf-(1→. Disruption of the ctrA gene required for surface localization of the K. kingae polysaccharide capsule resulted in elimination of GalNAc and Kdo but had no effect on the presence of Gal in bacterial surface extracts. In contrast, deletion of the pamABCDE locus involved in production of a reported galactan exopolysaccharide eliminated Gal but had no effect on the presence of GalNAc and Kdo in surface extracts. Disruption of ctrA and deletion of pamABCDE resulted in a loss of all carbohydrates in surface extracts. These results establish that K. kingae strain KK01 produces a polysaccharide capsule with the structure →3)-β-GalpNAc-(1→5)-β-Kdop-(2→ and a separate exopolysaccharide with the structure →5)-β-Galf-(1→. The polysaccharide capsule and the exopolysaccharide require distinct genetic loci for surface localization. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,420 |
Desulfovibrio vulgaris (Marburg) was grown on hydrogen plus sulfate as sole energy source in a medium containing excess iron. The topography of electron transport components was investigated. The bacterium contained per mg cells (dry weight) 30U hydrogenase (1U=1 μmol/min), 35 μg desulfoviridin (= bisulfite reductase), 0.6 U adenosine phosphosulfate reductase, 30 mU thiosulfate reductase, 0.3 nmol cytochrome c3 (Mr=13,000), 0.04 nmol cytochrome b, 0.85 nmol menaquinone, and 0.4 nmol ferredoxin. Hydrogenase (>95%) and cytochrome c3 (82%) were localized on the periplasmic side and desulfoviridin (≈95%), adenosine phosphosulfate reductase (87%), thiosulfate reductase (74%), and ferredoxin (71%) on the cytoplasmic side of the cytoplasmic membrane; menaquinone and cytochrome b were exlusively found in the membrane fraction. The location of the oxidoreductases indicate that in D. vulgaris (Marburg) H2 oxidation and sulfate reduction take place on opposite sides of the cytoplasmic membrane rather than on the same side, as has recently been proposed. | The lipoquinones and associated respiratory functions of 34 cultures representing 17 bacterial species hitherto assigned to the genus Actinobacillus or Pasteurella were investigated. Strains representing recognized Actinobacillus or Pasteurella species regularly contained desmethylmenaquinones and were capable of anaerobic electron transport with fumarate as a terminal acceptor when grown in oxygen-limited cultures. On aeration, the majority of the strains produced ubiquinones in addition to desmethylmenaquinones, with inter- and intraspecific variations. The use of lipoquinone patterns and features indicating fumarate respiration, such as stimulation of oxygen-limited growth by fumarate, in the classification and identification of Actinobacillus, Pasteurella, and phenotypically similar organisms is discussed. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,421 |
Multifunctional antioxidant potential of several brown and red edible seaweeds was evaluated in organic and aqueous soluble extracts. The great reduction power and radical scavenging activity of Bifurcaria bifurcata—a Sargassaceae brown algal species—in both organic and aqueous extracts were emphasized. In addition, two Gigartinaceae red algal species, Gigartina pistillata and Mastocarpus stellatus showed relatively high reduction power in the aqueous extracts. When all of the variables of the aqueous extracts were combined in a principal component analysis, a clear differentiation pattern among the tested seaweeds was observed. In the Phaeophyceae, the correlation found among reduction power, radical scavenging activity and total phenolic content is in favour of the involvement of phenolic compounds in the antioxidant mechanisms, whereas in the case of the Florideophyceae, the role of sulphate-containing polysaccharides in reduction power is presumably shown. Nevertheless, the evidence of some taxonomy-based clustering (class and order levels) in this study may prove that polyphenol and sulphate content, besides multifunctional antioxidant profile, are related to specific groups of seaweeds. This evidence could help the search of suitable sources of phytochemicals from seaweeds for further nutraceutical applications. | The yield and physical and chemical properties of agars from Gracilaria dura (C. Agardh) J. Agardh, harvested in Thau lagoon (Mediterranean sea, France), were investigated. The agar yield ranged from 32% to 35%. Gel strength of agar ranged from 263 to 600 g cm −2 , with the maximum observed in October. A positive correlation was found between agar yield and gel strength ( r =0.82; P r =0.77; P P | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,422 |
It has been recently reported (7) that application of abscisic acid to the root medium of decapitated tomato plants increases their exudation rate. This effect could be due to an increase in driving force or to increased permeability to water. The distinction between these two possibilities cannot easily be made by determining the effect of ABA on the osmotic concentration of the exudate. The common practice of assessing xylem osmotic concentration by measuring the osmolarity of the collected exudate has recently been subjected to serious criticism. Klepper (5) showed that the measured value is an underestimation of the real solute concentration in the water absorption region, whereas Meiri and Anderson (6) proved that under their experimental conditions the value obtained is an overestimation. It is accepted that the discrepancy between the osmolarity of the exudation fluid collected at the cut surface and that of the xylem sap at the region of osmotic water flux is a result of absorption or secretion of ions by cells surrounding the xylem. Any treatment which affects such ion transport may cause an error in determining the parameter affected. The present paper describes experiments in which bi-directional water fluxes through the root system were measured. Evidence is presented that ABA affects the hydraulic conductivity of the root system. | There is strong evidence that aquaporins are central components in plant water relations. Plant species possess more aquaporin genes than species from other kingdoms. According to sequence similarities, four major groups have been identified, which can be further divided into subgroups that may correspond to localization and transport selectivity. They may be involved in compatible solute distribution, gas-transfer (CO2, NH3) as well as in micronutrient uptake (boric acid). Recent advances in determining the structure of some aquaporins gives further details on the mechanism of selectivity. Gating behaviour of aquaporins is poorly understood but evidence is mounting that phosphorylation, pH, pCa and osmotic gradients can affect water channel activity. Aquaporins are enriched in zones of fast cell division and expansion, or in areas where water flow or solute flux density would be expected to be high. This includes biotrophic interfaces between plants and parasites, between plants and symbiotic bacteria or fungi, and between germinating pollen and stigma. On a cellular level aquaporin clusters have been identified in some membranes. There is also a possibility that aquaporins in the endoplasmic reticulum may function in symplasmic transport if water can flow from cell to cell via the desmotubules in plasmodesmata. Functional characterization of aquaporins in the native membrane has raised doubt about the conclusiveness of expression patterns alone and need to be conducted in parallel. The challenge will be to elucidate gating on a molecular level and cellular level and to tie those findings into plant water relations on a macroscopic scale where various flow pathways need to be considered. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,423 |
As crustose Corallinales on the coasts of Chile are usually flat, thin,strongly adherent to the rocks and with a high concentration ofpolysaccharides,there is a need to improve DNA extraction for molecular studies. The paperdescribes a protocol to achieve this, which includes steps for disruption ofcell walls and precipitation of polysaccharides and proteins; this leads to aPCR-quality product. The DNA obtained permitted amplification of SSU and rbcLgenes from small amounts of material (< 1 g) of several generaand species of Corallinales. Comparison of the sequences of small SSU fragments(approximately 500 bp), combined with morphological characters,together provide sufficient resolution to distinguish organisms at the genusandspecies levels. | Newly adapted extraction methods for harvesting total cellular DNA from kelp (Laminariales; Phaeophyta) exploit the life-history stages of these heteromorphic algae. Earlier techniques, developed primarily for chloroplast DNA extraction, were time consuming and labor intensive and required large quantities of fresh sporophyte tissue. In contrast, the new methods expedite DNA extraction by employing dried sporophyte laminae or fresh gametophyte filaments and meiospores. The current methods require less tissue and procedural manipulation, reducing the time and labor involved in DNA extraction. Additionally, the current methods were successfully employed to extract DNA from herbarium specimens up to 22 years old. Total cellular DNA yields were 12.8 and 26.4 μg:g−1 from dried laminae,: 1.9 and 11 μg from small volumes of concentrated gametophyte filaments (25 μL), and 43 to 54.5 μg from pellets of isolated meiospores (50 μL). Following purification on Sepharose columns, DNA from all three sources was sufficiently pure for molecular applications, including restriction endonuclease digestion, Southern blot-hybridizations, and amplification via the polymerase chain reaction. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,424 |
This study was conducted at the National Park of El Kala (Algeria) which has a mosaic of habitats, and located in north-eastern Algeria. This rich landscape induces another one; it is the ecological biodiversity of the park. We are interested in a particular species of mammal that is the Black Rat (Rattus rattus) and specifically in identifying different species of parasites that her little body homes and vehicles. The Black Rat’s skin is very noisy. We identified mites (Dermanysus bacoti), ticks (Ixodes ricinus), fleas (Nosopsyllus fasciatus and Xenopsylla chiopis), lice (Poluplax sp) and sandflies (Flebotomus sp.). | Summary Flea-borne infections are emerging or re-emerging throughout the world, and their incidence is on the rise. Furthermore, their distribution and that of their vectors is shifting and expanding. This publication reviews general flea biology and the distribution of the flea-borne diseases of public health importance throughout the world, their principal flea vectors, and the extent of their public health burden. Such an overall review is necessary to understand the importance of this group of infections and the resources that must be allocated to their control by public health authorities to ensure their timely diagnosis and treatment. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,425 |
The mineral element composition of plants, being a multivariate phenotypic trait, reflects the genotypic and environmental interactions influencing chemical content, including those related to ecological niche. Multivariate discriminant analysis was used to describe the position and area of nine different plant species in an "elemental hyperspace" based on the mineral element composition of leaves. With the exception of woody species, there was considerable interspecific variation in elemental concentrations and distinct separation among species in the element space. Semiaquatic macrophytes were quite distinct in their mineral element composition. The region each species occupies in the element space presumably corresponds to an adaptive zone of mineral element concentrations that enable each species to survive in the environment. Some evidence presented indicates that phenotypic variation in mineral element composition in a species reflects niche size in the nutrient environment. Interelement correlation... | Background and aims ::: Soil factors are driving forces that influence spatial distribution and functional traits of plant species. We test whether two anchor morphological traits—leaf mass per area (LMA) and leaf dry matter content (LDMC)—are significantly related to a broad range of leaf nutrient concentrations in Mediterranean woody plant species. We also explore the main environmental filters (light availability, soil moisture and soil nutrients) that determine the patterns of these functional traits in a forest stand. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,426 |
Growth and Mortality Parameters of Paralonchurus brasiliensis (Sciaenidae) Captured as Bycatch in Southeastern of Brazil ::: The present work provides preliminary informations on the growth and mortality of Paralonchurus brasiliensis captured as a bycatch in the inner shelf of Sao Paulo Southeastern Brazil. The samplings were carried out using a shrimp fishery trawl. After trawling, the specimens were separated from the other organisms and the fish size and numbers of individuals captured were recorded. A total of 5,943 specimens ranging from 3.6 to 19.9 cm in standard length were sampled. | Lots of work is going on to develop new drugs for human kind. Earlier our researches were mainly based on natural organic compound. Later we shifted our focus towards synthetic organic compound. Unfortunately synthetic drugs causing side effects. With change in our lifestyle we face new challenge in medical science which can be resolve by natural resources obtained from terrestrial and marine organism. Over thousands of new drugs launched in last decades originating from marine microbes, plants as well as animals. Now marine drugs either directly or indirectly play a vital role in pharmacology. Hence, this review provides baseline information of new discoveries in marine pharmacology and highlights the topics required attention. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,427 |
The densities of middle ear ossicles of golden moles (family Chrysochloridae, order Afrosoricida) were measured using the buoyancy method. The internal structure of the malleus was examined by high-resolution computed tomography, and solid-state NMR was used to determine relative phosphorus content. The malleus density of the desert golden mole Eremitalpa granti (2.44 g/cm3) was found to be higher than that reported in the literature for any other terrestrial mammal, whereas the ossicles of other golden mole species are not unusually dense. The increased density in Eremitalpa mallei is apparently related both to a relative paucity of internal vascularization and to a high level of mineralization. This high density is expected to augment inertial bone conduction, used for the detection of seismic vibrations, while limiting the skull modifications needed to accommodate the disproportionately large malleus. The mallei of the two subspecies of E. granti, E. g. granti and E. g. namibensis, were found to differ considerably from one another in both size and shape. | Thermogravimetric analysis linked to mass spectrometry (TGA-MS) shows changes in mass and identifies gases evolved when a material is heated. Heating to 600°C enabled samples of bone to be classified as having a high (cod clythrum, deer antler, and whale periotic fin bone) or a low (porpoise ear bone, whale tympanic bulla, and whale ear bone) proportion of organic material. At higher temperatures, the mineral phase of the bone decomposed. High temperature X-ray diffraction (HTXRD) showed that the main solids produced by decomposition of mineral (in air or argon at 800°C to 1000°C) were β-tricalcium phosphate (TCP) and hydroxyapatite (HAP), in deer antler, and CaO and HAP, in whale tympanic bulla. In carbon dioxide, the decomposition was retarded, indicating that the changes observed in air and argon were a result of the loss of carbonate ions from the mineral. Fourier transform infrared (FTIR) spectroscopy of bones heated to different temperatures, showed that loss of carbon dioxide (as a result of decomposition of carbonate ions) was accompanied by the appearance of hydroxide ions. These results can be explained if the structure of bone mineral is represented by ::: ::: $$ {\text{Ca}}_{{\text{10}} - {\text{x}}} {\text{V}}^{{\text{(Ca)}}} _{\text{x}} [({\text{PO}}_{\text{4}} )_{{\text{6}} - {\text{x}} - {\text{y}}} ({\text{HPO}}_{\text{4}} )_{\text{x}} ({\text{CO}}_{\text{3}} )_{\text{y}} ][({\text{OH}})_{{\text{2}} - {\text{x}} - {\text{y}}} ({\text{CO}}_{\text{3}} )_{\text{y}} {\text{V}}^{{\text{(OH)}}} _{\text{x}} ] $$ ::: ::: where V(Ca) and V(OH) correspond to vacancies on the calcium and hydroxide sites, respectively, and 2−x−y = 0.4. This general formula is consistent in describing both mature bone mineral (i.e., whale bone), with a high Ca/P molar ratio, lower HPO 4 2− content, and higher CO 3 2− content, and immature bone mineral (i.e., deer antler), with a low Ca/P ratio, higher HPO 4 2− , and lower CO 3 2− content. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,428 |
The initial steps of odorant recognition in the insect olfactory system involve odorant binding proteins (OBPs) and odorant receptors (ORs). While large families of OBPs have been identified in the malaria vector A. gambiae, little is known about their expression pattern in the numerous sensory hairs of the female antenna. We applied whole mount fluorescence in Situ hybridization (WM-FISH) and fluorescence immunohistochemistry (WM-FIHC) to investigate the sensilla co-expression of eight A. gambiae OBPs (AgOBPs), most notably AgOBP1 and AgOBP4, which all have abundant transcripts in female antenna. WM-FISH analysis of female antennae using AgOBP-specific probes revealed marked differences in the number of cells expressing each various AgOBPs. Testing combinations of AgOBP probes in two-color WM-FISH resulted in distinct cellular labeling patterns, indicating a combinatorial expression of AgOBPs and revealing distinct AgOBP requirements for various functional sensilla types. WM-FIHC with antisera to AgOBP1 and AgOBP4 confirmed expression of the respective proteins by support cells and demonstrated a location of OBPs within sensilla trichodea. Based on the finding that AgOBP1 and AgOBP4 as well as the receptor type AgOR2 are involved in the recognition of indole, experiments were performed to explore if the AgOBP-types and AgOR2 are co-expressed in distinct olfactory sensilla. Applying two-color WM-FISH with AgOBP-specific probes and probes specific for AgOR2 revealed a close association of support cells bearing transcripts for AgOBP1 and AgOBP4 and neurons with a transcript for the receptor AgOR2. Moreover, combined WM-FISH/-FIHC approaches using an AgOR2-specific riboprobe and AgOBP-specific antisera revealed the expression of the "ligand-matched" AgOBP1, AgOBP4 and AgOR2 to single trichoid hairs. This result substantiates the notion that a specific response to indole is mediated by an interplay of the proteins. | To understand olfactory discrimination in Anopheles gambiae, we made six purified recombinant OBPs and investigated their ligand-binding properties. All OBPs were expressed in bacteria with additional production of OBP47 in the yeast Kluveromyces lactis. Ligand-binding experiments, performed with a diverse set of organic compounds, revealed marked differences between the OBPs. Using the fluorescent probe N-phenyl-1-naphthylamine, we also measured the binding curves for binary mixtures of OBPs and obtained, in some cases, unexpected behaviour, which could only be explained by the OBPs forming heterodimers with binding characteristics different from those of the component proteins. This shows that OBPs in mosquitoes can form complexes with novel ligand specificities, thus amplifying the repertoire of OBPs and the number of semiochemicals that can be discriminated. Confirmation of the likely role of heterodimers was demonstrated by in situ hybridisation, suggesting that OBP1 and OBP4 are co-expressed in some antennal sensilla of A. gambiae. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,429 |
A controlled cross between Buddleja davidii var. nanhoensis (Chitt.) Rehd. 'Nanho Purple' and B. lindleyana Fort. ex Lindl. produced a hybrid. Pollen viability, male fertility, and the floral and vegetative characters are presented with a Latin diagnosis. Buddleja x luteolufaucia Elliott and Fantz is proposed as the name for this hybrid. Hybridity was confirmed using RAPD analysis. | Van Laere K., Van Huylenbroeck J., Van Bockstaele E. , 2011. Introgression of yellow flower colour in Buddleja davidii by means of polyploidisation and interspecific hybridisation . Hort. Sci. (Prague), 38: 96–103. To introduce yellow colour in the commercial Buddleja davidii (2n = 4x = 76) assortment, an interspecific breeding programme with B. globosa (2n = 2x = 38) was started. The first step was to perform chromosome doubling in B. globosa. Two of the obtained tetraploid B. globosa plants were subsequently used as male parent in interspecific crosses with the white flowering B. davidii cv. Nanhoensis Alba. In total 182 interspecific crosses were made and 18 F1 hybrids were obtained. Genome size measurements, chromosome counts and genomic in situ hybridisation (GISH) analysis proved the hybrid nature of most of the F1 hybrids. Plant morphology also expressed hybrid characteristics. F1 seedlings inherited the yellowish flower colour from | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,430 |
Various genera of marine bacteria, such as Pseudomonas, Vibrio, Acinetobacter, Flavobacterium, isolated from Tokyo, Sagami and Suruga Bays in Japan and from the central waters of the North Pacific Ocean were tested for deoxyribonucleic acid(DNA)-hydrolyzing activity. Among the bacterial genera tested, Vibrio was the predominant genus of DNA-hydrolyzing microorganisms in coastal waters, Tokyo, Sagami and Suruga Bays. However, large proportions of Pseudomonas species isolated from the North Pacific Ocean could hydrolyze DNA. The ratio of DNA-hydrolyzing organisms in this Pseudomonas group increased with distance in the transition from coastal to pelagic sea. In addition, 196 of the 200 DNA-hydrolyzing bacterial strains hydrolyzed ribonucleic acid. | Deoxyribonuclease (DNase) activity in seawater of Tokyo Bay was determined during 1972 and 1973. The activity was dependent on substrate (deoxyribonucleic acid) concentration within the range from o to io mg/l. During the summer the activity was high in the inner part of the bay and decreased on approaching the mouth of the bay. The intensity of activity was very high compared with the standing crop of particulate deoxyribonucleic acid (DNA) and this high activity corresponded with rapid decrease of the amount of nucleic acid with increasing depth in the water columns in the bay. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,431 |
A laboratory study was performed in order to investigate the short-term response of a benthic microbial community to a spring bloom sedimentation event at low temperature. In the laboratory, organic material collected with phytoplankton nets was added to undisturbed sediment cores receiving the following four treatments: (1) addition of organic material and aeration of the water overlying the sediment, (2) only aeration, (3) only organic material addition, and (4) no organic material addition or aeration. Changes in microbial activity and biomass in the sediments were followed during six days at an experimental temperature of 4oC by means of measurements of heat production, bacterial production ([3H]thymidine incorporation), oxygen consumption, bacterial biomass, ATP concentration and chlorophyll a concentration. In treatments with organic material additions, a response in terms of simultaneously increasing heat production, bacterial production and oxygen consumption rates was observed. Microbial activity increased slowly during the first four days in cores with organic matter addition, and between Days 4 and 6 microbial activity approximately doubled in aerated cores and decreased in non-aerated cores. Mineralization rates calculated from heat production showed that a small proportion of the added organic matter was mineralized in the surface sediment during the experiment. The results of this study show that the benthic microbial community could respond to an input of organic material at low temperature within a few days. A well oxygenated overlying water phase was necessary for the response to proceed. | The benthic microbial response to the deposition of naturalseston and the microbial impact on nutrient dynamics wasstudied in an experimental system using whole sediment coresequipped with flow-through systems for the overlying water. For20 days, changes in sediment bacterial activity, totalmetabolic activity (heat production), bacterial biomass,phosphorus fractions and basic chemistry were followed, as wellas the exchange of nutrients between sediment and water.Microbial activity and biomass increased immediately inresponse to the deposition of seston, peaked after seven daysand then decreased linearly over the remaining time of theexperiment. Co-settled bacteria were suggested to play animportant role in the microbial response. Changes in bacterialbiomass production, bacterial biomass and the NaOH-nrPextractable phosphorus fraction were concurrent in response toseston additions. The sediment acted as a trap for SRP from theoverlying water when bacterial activity was high and as asource when the bacterial activity decreased. Altogether, theresults suggest an important role of bacteria in theregeneration of seston P. Mineralization rates estimated fromsediment heat production showed that ca. 11% of the addedseston carbon was oxidized in the sediments during theexperiment. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,432 |
The author investigates the mode of penetration of the insect integument by pathogenic fungi, Aspergillus flavus, Beauveria bassiana, Cordyceps militaris, Metarrhizium anisopliae, Paecilomyces farinosus and non-pathogenic fungi Aspergillus oryzae and Trichothecium roseum. The test insect was Tenebrio molitor. The mode of penetration bears on mechanical pressure and enzymic activity, the discussion on the latter being tentative. | The incubation of imagines ofAcanthoscelides obtectusSay inoculated with conidia ofBeauveria bassiana(Bals.) Vuillemin under different relative humidities, between 0 and 100% R. H., shows that infection develops independantly of the humidity; the development of the fungus on the cadaver is only possible when the humidity values are near the saturation point. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,433 |
Dalal, Fram R. (University of Pennsylvania, Philadelphia), Ronald E. Gots, and Joseph S. Gots. Mechanism of adenine inhibition in adenine-sensitive mutants of Salmonella typhimurium. J. Bacteriol. 91: 507-513. 1966.-The inhibition of growth of Salmonella typhimurium by adenine was studied with three adenine-sensitive mutants. These mutants were acutely sensitive to inhibition by adenine, were prototrophic in their growth requirements, and represented mutational events in three different genetic loci. In all cases, inhibition by adenine was relieved noncompetitively by thiamine (or its pyrimidine moiety), pantothenate (or its pantoyl moiety), and methionine alone or, more efficiently, in the presence of lysine. Kinetics of reversal indicated that adenine inhibited the synthesis of the reversing agents, probably at the level of a common factor required for their syntheses, such as the folic acid coenzymes. Support for this inference has been found by the facts that one of the mutants was identified as a partial auxotroph for p-aminobenzoic acid, and sulfadiazine could sensitize the wild type to acute inhibition by adenine. | A new class of Saccharomyces cerevisiae mutants (aat1 - amino acid transport) has been identified. These mutants are unable to grow on rich medium or on minimal medium supplemented with certain amino acids (isoleucine, methionine, phenylalanine, tyrosine or valine). This phenotype is directly linked to the presence of the leu2 allele in these strains: aat1 LEU2 organisms grow normally on all media tested. Leucine uptake through the leucine-specific permease is inhibited to less than 35% of wild-type levels in aat1 cells preincubated in nonpermissive media, and the activity of the general amino acid permease is also low in these conditions. aat1 cells are therefore unable to grow on rich media because they cannot take up enough leucine to supplement their auxotrophic requirement. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,434 |
Paddlefish rostra vary in size and shape suggesting existence of multiple morphotypes. Measurements for 118 adult paddlefish from a Mississippi delta river indicate that the rostrum becomes shorter, narrower, and straighter as a fish grows. Negative allometric growth of rostra, and high variation within size classes, may obscure existence of distinctive rostral morphotypes. | ABSTRACT The comparative osteology and phylogenetic relationships of fossil and living paddlefishes (Polyodontidae) are investigated in detail for the first time. This peculiar, poorly known group is of great significance to phylogenetic studies of primitive actinopterygians, because it is one of only two chondrostean families that have survived to the present. Consequently the group is frequently used as an outgroup for studies of the many fossil chondrostean groups and for higher-level studies of actinopterygian (and even osteichthyan) interrelationships. The family has a long but spotty fossil record dating back to the Upper Cretaceous, including species represented by relatively complete skeletons or at least skulls. These relatively complete fossils are extremely rare and belong to the species †Paleopsephurus wilsoni MacAlpin, 1947 from the Upper Cretaceous Hell Creek Formation of Montana (redescribed here); †Polyodon sp. nov. from the lower Paleocene Tullock Formation of Montana (described here); an... | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,435 |
High-altitude Andean lakes (HAAL) are a treasure chest for microbiological research in South America. Their indigenous microbial communities are exposed to extremely high UV irradiation and to multiple chemical extremes (Arsenic, high salt content, alkalinity). Microbes are found both, free-living or associated into microbial mats with different degrees of mineralization and lithification, including unique modern stromatolites located at 3570 m above sea level. Characterization of these polyextremophilic microbes began only recently, employing morphological and phylogenetic methods as well as high-throughput sequencing and proteomics approach. Aside from providing a general overview on microbial communities, special attention is given to various survival strategies; HAAL's microbes present a complex system of shared genetic and physiological mechanisms (UV-resistome) based on UV photoreceptors and stress sensors with their corresponding response regulators, UV avoidance and protection strategies, damage tolerance and UV damage repair. Molecular information will be provided for what is, so far the most studied HAAL molecule, a CPD-Class I photolyase from Acinetobacter Ver3 (Laguna Verde, 4400 m). This work further proposes some strategies that make an appeal for the preservation of HAAL, a highly fragile environment that offers promising and ample research possibilities. | The sequenced genome of the poly-extremophile Exiguobacterium sp. S17, isolated from modern stromatolites at Laguna Socompa (3,570 m), a High-Altitude Andean Lake (HAAL) in Argentinean Puna revealed a putative proteorhodopsin-encoding gene. The HAAL area is exposed to the highest UV irradiation on Earth, making the microbial community living in the stromatolites test cases for survival strategies under extreme conditions. The heterologous expressed protein E17R from Exiguobacterium (248 amino acids, 85% sequence identity to its ortholog ESR from E. sibiricum) was assembled with retinal displaying an absorbance maximum at 524 nm, which makes it a member of the green-absorbing PR-subfamily. Titration down to low pH values (eventually causing partial protein denaturation) indicated a pK value between two and three. Global fitting of data from laser flash-induced absorption changes gave evidence for an early red-shifted intermediate (its formation being below the experimental resolution) that decayed (τ1 = 3.5 μs) into another red-shifted intermediate. This species decayed in a two-step process (τ2 = 84 μs, τ3 = 11 ms), to which the initial state of E17-PR was reformed with a kinetics of 2 ms. Proton transport capability of the HAAL protein was determined by BLM measurements. Additional blue light irradiation reduced the proton current, clearly identifying a blue light absorbing, M-like intermediate. The apparent absence of this intermediate is explained by closely matching formation and decay kinetics. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,436 |
Osmotic stress restricts glycolytic flux, growth (rate and yield), D-lactate productivity, and D-lactate tolerance in Escherichia coli B strain SZ132 during batch fermentation in mineral salts medium with 10% (w/v) sugar. Addition of 1 mM: betaine, a non-metabolized protective osmolyte, doubled cell yield, increased specific productivity of D-lactate and glycolytic flux by 50%, and tripled volumetric productivity (from 8.6 to 25.7 mmol l(-1) h(-1); 0.8 to 2.3 g l(-1) h(-1)). Glycolytic flux and specific productivity in mineral salts medium with betaine exceeded that in Luria broth, substantially eliminating the need for complex nutrients during D-lactate production. In mineral salts medium supplemented with betaine, SZ132 produced approximately 1 mol D-lactate (90 g) per 100 g sugar (glucose or sucrose). | Derivatives of ethanologenic Escherichia coli K011 were constructed for D: (-)-lactate production by deleting genes encoding competing pathways followed by metabolic evolution, a growth-based selection for mutants with improved performance. Resulting strains, SZ132 and SZ186, contain native genes for sucrose utilization. No foreign genes are present in SZ186. Strain SZ132 also contains a chromosomally integrated endoglucanase gene (Erwinia chrysanthemi celY). Strain SZ132 produced over 1 mol lactate per liter of complex medium containing 10% (w/v) sugar (fermentation times of 48 h for glucose, 120 h for sucrose). Both strains produced 667-700 mmol lactate per liter of mineral salts medium. Yields for metabolized sugar ranged from 88% to 95% in both media. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,437 |
Two lectins were detected in haemolymph from the oyster Pinctada maxima, a macromolecular (approximately 8 X 10(6) dalton) N-acetyl-galactosamine-binding lectin and a lower molecular weight (approximately 4 X 10(5) dalton) alpha-galactose-binding lectin. The macro-molecular lectin agglutinated human type A erythrocytes to a greater extent than human type B or O erythrocytes and was the major lectin detected in the haemolymph. The 4 X 10(5) dalton lectin agglutinated human type A, B and O erythrocytes to the same extent. | Owing to the global development of shellfish culture and increasing awareness of the risks associated with infectious diseases in bivalve molluscs, the importance of studies on defense mechanisms of bivalves has become widely recognized. Japan has a long history of oyster culture, however, there have been meager investigations on diseases and defense mechanisms of bivalves in the country. In foreign countries, especially those in the West, the immunological responses of bivalves, being composed of cellular and humoral factors, have been approarched from various standpoints such as comparative immunology, pathology/health management, environmental monitoring, and exploitation of novel antimicrobial agents. In this paper, studies on humoral defense factors in bivalves represented by oysters, mussels and clams, made mainly with the interest in interaction between hosts and pathogens, are reviewed. For each humoral defense factor, history of researches, chemical and molecular characteristics, and functions of the following factors are presented here with some critical comments: lectins (agglutinins), lysozymes, antimicrobial peptides, pro-phenoloxidase (PO) activating system, and other humoral foctors (protease inhibitors, lysosomal enzymes, heat-shock proteins). | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,438 |
The giant sporangiophores of Phycomyces blakesleeanus turn towards blue and away from ultraviolet C sources (wavelength under 310 nm). We have isolated fifteen mutants with normal blue tropism but defective ultraviolet tropism. Wild-type sporangiophores described a double turn when exposed successively to blue and ultraviolet beams coming from the same side; under certain conditions, the mutants turned only to the blue. The new uvi mutations modified the behaviour in heterokaryosis and were lethal in homokaryosis, i.e., they affected essential cellular components. The responses of the wild type and one of the mutants were registered and evaluated with a computer-aided device. The mutant behaved normally under blue light, but took longer than the wild type to turn away from the ultraviolet source. With very weak ultraviolet stimuli (10−8 and 10−9 W · m−2), the wild type turned towards the source, but the mutant did not respond. Calculations of absorbed-energy distributions in the sporangiophore showed that Phycomyces responds differently to similar spatial distributions of blue and ultraviolet radiations. Wild-type and mutant sporangiophores had the same high ultraviolet absorption due to gallic acid. We conclude that ultraviolet tropism is not just a modification of blue phototropism due to the high ultraviolet absorption of the sporangiophores. Phycomyces has a separate sensory system responsive to ultraviolet radiation, but not to blue light. | Normally, the dioptrics in air of the cylindrical sporangiophore of Phycomyces blakesleeanus confer on the distal side a focusing advantage of about 30 per cent for unilateral stimuli of parallel light. This advantage can be nullified or reversed to produce negative curvatures by means of diverging light stimuli. A thin cylindrical glass lens was positioned 0.15 mm from the light-adapted growing zone with its long axis parallel to the long axis of the sporangiophore. A 3 minute blue stimulus was given and the lens removed. Reproducible negative curvatures were observed with a maximum of 13 degrees occurring within 8 minutes after the beginning of the stimulus. Experiments in air were done in a water-saturated atmosphere to minimize avoidance responses due to the proximity of the lens. The data support Buder's conclusion that the focusing advantage is the principal mechanism which produces the response differential necessary for phototropism. When the lens advantage is small, the attenuation becomes important in determining the direction of the response. Data obtained from sporangiophores immersed in inert liquids indicate that the attenuation is about 14 per cent. Therefore, whenever the focusing advantage is less than 14 per cent, negative curvatures are produced by unilateral stimuli. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,439 |
Comparative genomic sequencing is shedding new light on bacterial identification, taxonomy and phylogeny. An in silico assessment of a core gene set necessary for cellular functioning was made to determine a consensus set of genes that would be useful for the identification, taxonomy and phylogeny of the species belonging to the subclass Actinobacteridae which contained two orders Actinomycetales and Bifidobacteriales. The subclass Actinobacteridae comprised about 85% of the actinobacteria families. The following recommended criteria were used to establish a comprehensive gene set; the gene should (i) be long enough to contain phylogenetically useful information, (ii) not be subject to horizontal gene transfer, (iii) be a single copy (iv) have at least two regions sufficiently conserved that allow the design of amplification and sequencing primers and (v) predict whole-genome relationships. We applied these constraints to 50 different Actinobacteridae genomes and made 1,224 pairwise comparisons of the genome conserved regions and gene fragments obtained by using Sequence VARiability Analysis Program (SVARAP), which allow designing the primers. Following a comparative statistical modeling phase, 3 gene fragments were selected, ychF, rpoB, and secY with R2>0.85. Selected sets of broad range primers were tested from the 3 gene fragments and were demonstrated to be useful for amplification and sequencing of 25 species belonging to 9 genera of Actinobacteridae. The intraspecies similarities were 96.3-100% for ychF, 97.8-100% for rpoB and 96.9-100% for secY among 73 strains belonging to 15 species of the subclass Actinobacteridae compare to 99.4-100% for 16S rRNA. The phylogenetic topology obtained from the combined datasets ychF+rpoB+secY was globally similar to that inferred from the 16S rRNA but with higher confidence. It was concluded that multi-locus sequence analysis using core gene set might represent the first consensus and valid approach for investigating the bacterial identification, phylogeny and taxonomy. | To what extent is the tree of life the best representation of the evolutionary history of microorganisms? Recent work has shown that, among sets of prokaryotic genomes in which most homologous genes show extremely low sequence divergence, gene content can vary enormously, implying that those genes that are variably present or absent are frequently horizontally transferred. Traditionally, successful horizontal gene transfer was assumed to provide a selective advantage to either the host or the gene itself, but could horizontally transferred genes be neutral or nearly neutral? We suggest that for many prokaryotes, the boundaries between species are fuzzy, and therefore the principles of population genetics must be broadened so that they can be applied to higher taxonomic categories. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,440 |
Many plant pathogens, viruses, fungi and bacteria, are spread by intermediaries or vectors. For some this is their only method of spread and for most viruses vectors are the normal agents of dispersal. Fungi, bacteria and some viruses are carried passively, as contaminants of the vector, whereas most viruses have a complex biological interaction with their vectors which is only now beginning to be understood. ::: ::: ::: ::: The control of pathogens carried passively can be achieved only by preventing contact between vector and pathogen. Therefore options for control include killing either vector or pathogen by a toxic pesticide or deterring the feeding of a potential vector. Viruses infecting plants cannot be killed by chemicals, therefore control has to be directed at the vector. The biological interactions between vector and virus offer opportunities for interfering with the transmission processes without recourse to toxic material. ::: ::: ::: ::: Interactions, especially between viruses and their vectors, are discussed in relation to current and future opportunities for control. | The relevance of studies on aphid-plant relationships for plant virus epidemiology is highlighted. Many behavior-modulating chemicals (semiochemicals) play a major role in intraspecific (pheromones) or interspecific (allelochemics) interrelations and therefore offer opportunities to interfere with virus transmission. Present knowledge on the role of semiochemicals in different behavioral events is emphasized using examples (alarm and sex pheromones, allelochemics involved in host selection, antifeedants) and their potential for controlling virus transmission and spread is discussed. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,441 |
The complete nucleotide sequence of the genome of artichoke mottle crinkle Virus (AMCV), a member of the tombusvirus group, has been determined. The genome is 4790 nucleotides (nt) in length. A full-length cDNA of the AMCV genome has been cloned in pUC9 downstream of the T7 RNA polymerase promoter. Transcripts were infective when inoculated onto Nicotiana clevelandii and N. benthamiana plants. The AMCV genome contains five open reading frames (ORFs). The first ORF from the 5' terminus (ORF1) encodes a protein with a predicted Mr of 33K. ORF2 extends through the amber termination codon of ORF1 to yield a polypeptide of predicted M r 92K and which is the putative RNAdependent RNA polymerase. ORF3 codes for the coat protein (41K). Two nested ORFs in different reading frames (ORFs 4 and 5) code for a 22K and a 19K polypeptide respectively. Sequence homologies suggest that the 22K protein could be involved in cell-to-cell movement of virus. ORFs 3, 4 and 5 are translated from two 3' coterminal subgenomic (sg) RNAs, the 5' termini of which have been mapped. The two sg RNAs are 2155 (sgl) and 934 (sg2) nt in length. ORF3 is expressed from sgl RNA whereas ORFs 4 and 5 are potentially expressed from sg2 RNA. Time course experiments with Cynara scolymus protoplasts indicate that during AMCV infection both positive and negative strands of genomic and sg RNAs are produced and that sg2 RNA is produced before and at a higher level than sgl RNA. | The complete genomic sequence of a new virus, first found infecting oats in Wales, UK, has been determined. The genome is a positive-sense ssRNA molecule, 4114 nucleotides in length, examination of which indicates the presence of four ORFs. The first ORF initiating at the 5′ terminus (ORF1) encodes a protein with a predicted M ::: r of 23476 (p23). ORF2 extends through the amber termination codon of ORF1 to give a protein with a predicted M ::: r of 84355 (p84). The readthrough domain of p84 contains amino acid sequence similarities with a number of putative RNA-dependent RNA polymerases. ORF3 is in a different reading frame from ORF1/2 and encodes a protein with an M ::: r of 48231 (p48), identified as the coat protein by direct peptide sequencing. ORF4 nests within ORF3 but is in a different frame from it and codes for a protein with a predicted M ::: r of 8220 (p8). Comparisons of peptide sequence, particularly within the putative polymerase region and within the S domain of the coat protein, highlight similarities with members of both the tombusvirus and carmovirus groups. The coat protein region shows most similarity with members of the tombusvirus group, whilst the size and predicted strategy of the genome seem to be intermediate between that of the carmovirus and tombusvirus groups. These features highlight possible evolutionary links with each group whilst being distinct from both. We propose the name of oat chlorotic stunt for this new virus. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,442 |
Extensive sulfur isotope distribution data for sulfides precipitated in an intertidal environment show no distinctive features when compared with isotope values for other marine, sedimentary sulfides. The fractionation ranges from α = 1.030 to α = 1.048. The pattern is characteristic for a system essentially open to sulfate, and isotope analyses of interstitial sulfates are corroborative. A population of sulfate-reducing bacteria of the order of 109 organisms per cc of interstitial water is indicated. Seasonal variation of the isotope distribution reflects a transient sulfide composition and a bacterial population in which the fractionation effect is indirectly controlled by temperature. The data presented for this modern shallow water environment are at variance with an earlier assessment of isotopic distributions in ancient sulfides which linked shallow water environments with limited fractionation (α ⩽ 1.025) in a closed system. | Sulfur, the 10th most abundant element in the universe and the 14th most abundant element in the Earth’s crust, is the defining element of sulfide minerals and provides insights into the origins of these minerals through its stable isotopes. The insights come from variations in the isotopic composition of sulfide minerals and related compounds such as sulfate minerals or aqueous sulfur species, caused by preferential partitioning of isotopes among sulfur-bearing phases, known as fractionation. These variations arise from differences in temperature, or more importantly, oxidation and reduction reactions acting upon the sulfur. The oxidation and reduction reactions can occur at high temperature, such as in igneous systems, at intermediate temperatures, such as in hydrothermal systems, and at low temperature during sedimentary diagenesis. At high temperatures, the reactions tend to occur under equilibrium conditions, whereas at low temperatures, disequilibrium is prevalent. In addition, upper atmospheric processes also lead to isotopic fractionations that locally appear in the geologic record. ::: ::: Sulfur isotope geochemistry as a subdiscipline of the geological sciences began in the late 1940s and early 1950s with early publications by Thode et al. (1949) and Szabo et al. (1950) on natural variations of sulfur isotopes, and Macnamara and Thode (1950) on the isotopic composition of terrestrial and meteoritic sulfur. Sakai (1957) presented an early scientific summary of sulfur isotope geochemistry, with a particular emphasis on high-temperature processes. Thode et al. (1961) also presented an early summary, but with an emphasis on low-temperature processes. Both of these summaries outlined salient aspects of the global sulfur cycle. Sulfur isotope geochemistry understandably has had a long history of application to the study of sulfide-bearing mineral deposits. Early noteworthy papers include those by Kulp et al. (1956) and Jensen (1957, 1959). Similarly, there is also a legacy of contributions to understanding … | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,443 |
Several methods based on screening for a 16S ribosomal RNA gene marker have been developed for rapid and sensitive detection of pathogenic microorganisms. One such method, CE-based SSCP (CE-SSCP), has enormous potential because the technique can separate sequence variants using a simple procedure. However, conventional CE-SSCP systems have limited resolution and cannot separate most 16S ribosomal RNA gene-specific markers unless combined with additional modification steps. A high-resolution CE-SSCP system that uses a poly(ethyleneoxide)-poly(propyleneoxide)-poly(ethyleneoxide) triblock copolymer matrix was recently developed and shown to effectively separate highly similar PCR products. In this study, we developed a method based on a high-resolution CE-SSCP system using a poly(ethyleneoxide)-poly(propyleneoxide)-poly(ethyleneoxide) triblock copolymer that is capable of simultaneous and quantitative detection of 12 clinically important pathogens. Pathogen markers were amplified by PCR using universal primers and separated by CE-SSCP; each marker peak was well separated at baseline and showed a characteristic mobility, allowing easy identification of pathogens. A series of experiments using different amounts of genomic pathogen DNA showed that the method had a limit of detection of 0.31―1.56 pg and a dynamic range of approximately 10 2 . These results indicate that high-resolution CE-SSCP systems have considerable potential in the clinical diagnosis of bacteria-induced diseases. | Rapid transmission, high morbidity, and mortality are the features of human infectious diseases caused by microorganisms, such as bacteria, fungi, and viruses. These diseases may lead within a short period of time to great personal and property losses, especially in regions where sanitation is poor. Thus, rapid diagnoses are vital for the prevention and therapeutic intervention of human infectious diseases. Several conventional methods are often used to diagnose infectious diseases, e.g. methods based on cultures or morphology, or biochemical tests based on metabonomics. Although traditional methods are considered gold standards and are used most frequently, they are laborious, time consuming, and tedious and cannot meet the demand for rapid diagnoses. Disease diagnosis using capillary electrophoresis methods has the advantages of high efficiency, high throughput, and high speed, and coupled with the different nucleic acid detection strategies overcomes the drawbacks of traditional identification methods, precluding many types of false positive and negative results. Therefore, this review focuses on the application of capillary electrophoresis based on nucleic detection to the diagnosis of human infectious diseases, and offers an introduction to the limitations, advantages, and future developments of this approach. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,444 |
We test the hypothesis that echolocation behavior can be used to find the border between bat habitats. Assuming that bats react to background targets in “edge space” but not in “open space”, we determined the border between these two habitat types for commuting individuals of the parti-colored bat Vespertilio murinus. We recorded sequences of bats’ echolocation signals while they flew parallel to the walls of large buildings and to the ground and determined the signals’ average bandwidth, duration, and pulse interval. These parameters varied systematically with the estimated horizontal and vertical distances between the bats and the background. A distinct effect of horizontal distance to the background on echolocation behavior was found for horizontal distances of less than 6 m, thus indicating the border between edge and open space. Only a few bats flew at vertical distances below 5 m. However, enough passages at vertical distances of 5 m and above indicated that the vertical border is somewhere below a distance of 5 m. Within edge space, V. murinus reacted to the background by reducing signal duration, increasing bandwidth at closer distances, and often emitting one signal per wing beat. In open space, signal parameters did not vary as a function of distance to the background. There, V. murinus emitted the longest signals with the narrowest bandwidth and often made one or two wing beats without emitting a pulse. With our data we support with statistical methods the hypothesis that echolocation behavior reveals the border between the habitat types “edge” and “open space”. | SUMMARY We compared the flight and echolocation behaviour of a vespertilionid bat ::: ( Myotis nattereri ) approaching a large stationary or a small moving ::: target. Bats were trained to either land on a landing grid or to catch a ::: moving tethered mealworm. When closing in on these two targets, the bats ::: emitted groups of sounds with increasing number of signals and decreasing ::: pulse interval and duration. When pursuing the mealworm, the approach phase ::: always ended with a terminal group consisting of buzz I and buzz II. When ::: landing, the bats emitted either a terminal group consisting of buzz I alone, ::: with one or two extra pulses, or a group consisting of buzz I and buzz II. In ::: all situations, buzz I ended on average between 47–63 ms prior to ::: contact with the target of interest, which is approximately the reaction time ::: of bats. Therefore, the information collected in buzz II does not guide the ::: bats to the target. The relevant part of the approach phase to reach the ::: target ends with buzz I. The basic sound pattern of this part is rather ::: similar and independent of whether the bats approach the large stationary or ::: the small moving target. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,445 |
Giardia duodenalis is a common protozoan that colonizes and reproduces in the small intestine, causing giardiasis. This parasite infects a wide range of vertebrate hosts, including humans, domestic animals and wildlife. It has been suggested that chinchillas (Chinchilla lanigera) kept as domestic pets are potential reservoirs for the zoonotic transmission of G. duodenalis. In this study, 140 chinchilla samples from four cities in China were examined to determine the prevalence of G. duodenalis. Thirty-eight (27.1%) chinchillas were found to be positive for G. duodenalis. The prevalence of infection was analyzed in relation to collection site, age and sex. Molecular characterization was also carried out on the 38 chinchilla samples to determine common genotypes. G. duodenalis assemblages A and B were identified in the chinchilla samples by analysis of the small subunit ribosomal RNA (ssur RNA) gene. Genotyping at the subtype level using multiple genes (glutamate dehydrogenase (gdh), triose phosphate isomerase (tpi) and β-giardin (bg) genes) determined that the majority of assemblage A isolate sequences were identical to subtype AI. Assemblage B isolates showed variability among the nucleotide sequences belonging to subtype BIV. This is the first report of G. duodenalis in chinchillas from China. As subtype AI and BIV are associated with human infection, G. duodenalis in chinchillas should be regarded as zoonotic. | To develop T m -shift genotyping method for detection of cat-derived Giardia lamblia, two sets of primers with two GC-rich tails of unequal length attached to their 5′-end were designed according to two SNPs (BG434 and BG170) of β-giardin (bg) gene, and specific PCR products were identified by inspection of a melting curve on real-time PCR thermocycler. A series of experiments on the stability, sensitivity, and accuracy of T m -shift method was tested, and clinical samples were also detected. The results showed that two sets of primers based on SNP could distinguish accurately between assemblages A and F. Coefficient of variation of T m values of assemblage A and F was 0.14 and 0.07% in BG434 and 0.10 and 0.11% in BG170, respectively. The lowest detection concentration was 4.52 × 10−5 and 4.88 × 10−5 ng/μL samples of assemblage A and F standard plasmids. The T m -shift genotyping results of ten DNA samples from the cat-derived G. lamblia were consistent with their known genotypes. The detection rate of clinical samples by T m -shift was higher than that by microscopy, and their genotyping results were in complete accordance with sequencing results. It is concluded that the T m -shift genotyping method is rapid, specific, and sensitive and may provide a new technological mean for molecular detection and epidemiological investigation of the cat-derived G. lamblia. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,446 |
The levels of nitrate in 52 drinking water wells in rural Central Java, Indonesia were evaluated in April 2014, and the results were used for a health risk assessment for the local populations by using probabilistic techniques. The concentrations of nitrate in drinking water had a range of 0.01-84 mg/L, a mean of 20 mg/L and a medium of 14 mg/L. Only two of the 52 samples exceeded the WHO guideline values of 50 mg/L for infant methaemoglobinaemia. The hazard quotient values as evaluated against the WHO guideline value at the 50 and 95 percentile points were HQ50 at 0.42 and HQ95 at 1.2, respectively. These indicated a low risk of infant methaemoglobinaemia for the whole population, but some risk for the sensitive portion of the population. The HQ50 and HQ95 values based on WHO acceptable daily intake dose for adult male and female were 0.35 and 1.0, respectively, indicating a generally a low level of risk. A risk characterisation linking birth defects to nitrate levels in water consumed during the first three months of pregnancy resulted in a HQ50/50 values of 1.5 and a HQ95/5 value of 65. These HQ values indicated an elevated risk for birth defects, in particular for the more sensitive population. A sanitation improvement program in the study area had a positive effect in reducing nitrate levels in wells and the corresponding risk for public health. For example, the birth defect HQ50/50 values for a subset of wells surveyed in both 2014 and 2015 was reduced from 1.1 to 0.71. | A probabilistic risk assessment (PRA) using two-dimensional Monte Carlo analysis was followed to inspect the health risk associated with consumption of groundwater contaminated with nitrate in 26 wells located in rural areas of Malayer, Iran. In this technique, probability distributions were assigned to the concentration of nitrate in groundwater, daily intake rate of water, frequency of exposure together with total duration of exposure and the risk levels were worked out for adults and children, accordingly. In addition, four scenarios were investigated with an emphasis on the effect of correlation between exposure frequency and ingestion rate of water on estimated risk values. It was indicated that inclusion of correlation between parameters would influence the upper median quartile values of estimated risk however the total impact on the results of health risk assessment is not significant. Moreover, considering the 3rd quartile value of risk level for the total size of the study area, the risk level related to children was higher than that of the adults with respective values of 0.621 and 0.989. The spatial variation of nitrate was considered using ordinary kriging and a novel combined method of random forest and spatial proximity as covariate. It was concluded that the predictions made by ordinary kriging were more accurate than the random forest technique which can be attributed to the small data sets used in this research. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,447 |
Bilirubin binding to albumins of different species has been studied with stopped-flow measurements of protein fluorescence quenching and the appearance of bilirubin fluorescence. Binding, itself, as indicated by quenching of protein fluorescence, occurs at an immeasurably fast rate. The visible fluorescence of bilirubin, however, appears more slowly. The development of this fluorescence is a first-order process with a half-time of 50–100 msec, depending on the species of albumin, and may be related to the relaxation of bilirubin to a helical conformation. A slower secondary quenching of protein fluorescence occurs after the initial quenching associated with binding itself. The secondary process reduces the already quenched fluorescence by another 50%, is a first-order reaction, and has a half-time of 300–400 msec. From energy transfer calculations, a 4 A migration of bound bilirubin along the albumin binding crevice toward tryptophans could account for this degree of secondary quenching, but a protein conformational change is not ruled out. Multiple relaxation processes in macromolecular binding may prove to be rather general phenomena. | The changes in the far-UV CD signal, intrinsic tryptophan fluorescence and bilirubin absorbance showed that the guanidine hydrochloride (GdnHCl)-induced unfolding of a multidomain protein, human serum albumin (HSA), followed a two-state process. However, using environment sensitive Nile red fluorescence, the unfolding and folding pathways of HSA were found to follow a three-state process and an intermediate was detected in the range 0.25–1.5 m GdnHCl. The intermediate state displayed 45% higher fluorescence intensity than that of the native state. The increase in the Nile red fluorescence was found to be due to an increase in the quantum yield of the HSA-bound Nile red. Low concentrations of GdnHCl neither altered the binding affinity of Nile red to HSA nor induced the aggregation of HSA. In addition, the secondary structure of HSA was not perturbed during the first unfolding transition (<1.5 m GdnHCl); however, the secondary structure was completely lost during the second transition. The data together showed that the half maximal loss of the tertiary structure occurred at a lower GdnHCl concentration than the loss of the secondary structure. Further kinetic studies of the refolding process of HSA using multiple spectroscopic techniques showed that the folding occurred in two phases, a burst phase followed by a slow phase. An intermediate with native-like secondary structure but only a partial tertiary structure was found to form in the burst phase of refolding. Then, the intermediate slowly folded into the native state. An analysis of the refolding data suggested that the folding of HSA could be best explained by the framework model. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,448 |
Gas vesicles are intracellular proteinaceous organelles that facilitate bacterial colonization of static water columns. In the enterobacterium Serratia sp. ATCC 39006, gas vesicle formation requires the proteins GvpA1, GvpF1, GvpG, GvpA2, GvpK, GvpA3, GvpF2 and GvpF3 and the three gas vesicle regulatory proteins GvrA, GvrB and GvrC. Deletion of gvpC alters gas vesicle robustness and deletion of gvpN or gvpV results in small bicone vesicles. In this work, we assessed the impacts on gas vesicle formation when each of these 14 essential proteins was overexpressed. Overproduction of GvpF1, GvpF2, GvrA, GvrB or GvrC all resulted in significantly reduced gas vesicle synthesis. Perturbations in gas vesicle formation were also observed when GvpV and GvpA3 were in excess. In addition to impacts on gas vesicle formation, overproduction of GvrA or GvrB led to elevated biosynthesis of the tripyrrole pigment, prodigiosin, a secondary metabolite of increasing medical interest due to its antimalarial and anticancer properties. Finally, when GvpG was overexpressed, gas vesicles were still produced, but the cells exhibited a growth defect. Further analysis showed that induction of GvpG arrested cell growth and caused a drop in viable count, suggesting a possible physiological role for this protein linking gas vesicle biogenesis and binary fission. These combined results demonstrate that the stoichiometry of individual gas vesicle proteins is crucially important for controlled organelle morphogenesis and flotation and provides evidence for the first link between gas vesicle assembly and cell division, to our knowledge. | The effect of anaerobiosis on the gas vesicle formation was investigated in three Halobacterium salinarum strains, Haloferax mediterranei and in Haloferax volcanii transformants. All these strains significantly reduced gas vesicle formation or lacked these structures under anoxic conditions. When grown by arginine fermentation, Hbt. salinarum PHH4 lacked gas vesicles, whereas Hbt. salinarum PHH1 and NRC-1 contained 5-20 small gas vesicles arranged in two to three aggregates per cell instead of the 30-80 gas vesicles present under oxic conditions. The enlargement presumably stopped due to a depletion of Gvp proteins. Also Hfx. mediterranei and Hfx. volcanii transformants lacked gas vesicles under anoxic growth and yielded a 10-fold reduced gvp transcription. Even the gas vesicle-overproducing DeltaD transformants did not form gas vesicles under anoxic conditions, demonstrating that the repressing protein GvpD was not involved. The presence of large amounts of GvpA implied that the assembly of the gas vesicles was inhibited. When Hbt. salinarum PHH1 and NRC-1 were grown with dimethyl sulphoxide or trimethylamine N-oxid under anoxic conditions the number but not the size of gas vesicles was reduced. This was in contrast to the previously reported overproduction of gas vesicles in NRC-1 that turned out to depend on the citrate-containing medium used for growth. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,449 |
Management decisions in many alfalfa integrated pest management programs are based on a single 30-stem sample estimate of the alfalfa weevil, Hypera postica (Gyllenhal), larval population. Repeated 30-stem samples were taken from five fields under a variety of stand conditions over a 2-yr period to calculate the variance/mean relationship with Taylor’s power law. A computer simulation was used to estimate the proportion of single-sample estimates that underestimate (fail to spray) or overestimate (spray unnecessarily) a known population mean in relation to an economic threshold. Management-decision errors were found to increase significantly as the population mean neared the threshold. | Two field-sampling methods, shake-bucket and sweep-net, were compared for use in monitoring alfalfa weevil, Hypera postica (Gyllenhal), larvae in alfalfa hay of the high plains and intermountain region of North America. In this region, alfalfa grows to sufficient height to use both methods before the more damaging late instars peak in abundance. Both methods also were compared with extracting larvae by using Berlese funnels in the laboratory. The shake-bucket method was more sensitive in detecting small larvae (first and second instars) than large larvae (third and fourth instars), and the sweep-net method detected a lower proportion of small larvae. The number of larvae collected with the shake-bucket method was strongly correlated with number of larvae recovered from Berlese funnels (total larval counts, R2 = 0.85). Correlation of the sweep-net samples with the Berlese extraction was also significant but less strong (R2 = 0.56). In addition, sampler instruction was evaluated to determine whethe... | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,450 |
Spatial and temporal patterns of dissolved arsenic in groundwater were documented from samples collected at 987 water wells in the High Plains (Ogallala) Aquifer of Texas, USA. Sampled wells had a median depth of 73 m. Historic pesticide and defoliant applications to cotton fields are potential sources of arsenic in the study area. From a survey of samples collected between 2000 and 2004, observed arsenic concentrations ranged from less than 2.0 to 561 µg/L, with a median concentration of 4.3 µg/L. Approximately 20% of all samples, including 123 wells serving public, domestic, and commercial organizations, exceeded the current 10 µg/L drinking water standard. Arsenic concentrations were generally higher in the southern part of the aquifer, possibly from increased loading and less dilution. In 86% of sampled wells, arsenic concentrations changed by less than 5 µg/L over four‐ and eight‐year periods. Arsenic concentrations decreased in 64% of wells with discernible concentration changes, but increased by more than 100 µg/L at a few wells in the southern part of the study area. Results suggest a lingering arsenic problem and need for filtration of drinking water at several locations within the study area. | New Delhi--A potentially devastating health crisis is quietly unfolding in West Bengal, India, where high levels of arsenic have leached into well water and have put more than a million Indians at risk. The immense scale of the human tragedy has begun to attract the attention of scientists from around the world, who see in this grim event an unprecedented chance to learn more about the health effects of arsenic, a known carcinogen. “We9re talking about numbers [of arsenic-poisoning victims] that have never been seen before in the world,” says University of California, Berkeley, epidemiologist Allan Smith. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,451 |
Herpesviruses are double-stranded DNA, enveloped viruses that infect host cells through fusion with either the host cell plasma membrane or endocytic vesicle membranes. Efficient infection of host cells by herpesviruses is remarkably more complex than infection by other viruses, as it requires the concerted effort of multiple glycoproteins and involves multiple host receptors. The structures of the major viral glycoproteins and a number of host receptors involved in the entry of the prototypical herpesviruses, the herpes simplex viruses (HSVs) and Epstein-Barr virus (EBV), are now known. These structural studies have accelerated our understanding of HSV and EBV binding and fusion by revealing the conformational changes that occur on virus-receptor binding, depicting potential sites of functional protein and lipid interactions, and identifying the probable viral fusogen. | Background ::: HCMV hyperimmunoglobulin-preparations (HIG) contain high concentrations of HCMV-specific IgG. The reduced maternofetal-HCMV-transmission rate of IgG may be due to HCMV-specific neutralizing antibodies against the HCMV pentameric complex (PC). In contrast to HIG, standard intravenous immunoglobulin (IVIG) may have more neutralization (NT) capacity than HIG due to higher IgG subclass 3 levels (Planitzer et al., 2011). | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,452 |
We investigated an outbreak of tuberculosis in a large shelter for the homeless to assess the role of exogenous reinfection as opposed to reactivation of endogenous infection as the cause of secondary tuberculosis in this population. Exogenous reinfection is considered relatively unimportant in the United States and other developed countries. Of 49 shelter-related cases, 22 had cultures resistant to both isoniazid and streptomycin and of the same phage type, indicating recent transmission originating with a single index patient. The probable index patient had a 10-year history of isoniazid and streptomycin resistance — an uncommon pattern at the shelter during the three years preceding the outbreak. In 4 of the 22 cases, the patient had previously had documented tuberculosis infection or disease. These reinfected patients had extensive lung cavitation and numerous acid-fast bacilli on sputum smears — features associated with contagiousness. In contrast, patients with tuberculosis for the first ti... | The emergence of whole genome sequencing (WGS) technologies as primary research tools has allowed for the detection of genetic diversity in Mycobacterium tuberculosis (Mtb) with unprecedented resolution. WGS has been used to address a broad range of topics, including the dynamics of evolution, transmission and treatment. Here, we have analyzed 55 publically available genomes to reconstruct the phylogeny of Mtb, and we have addressed complications that arise during the analysis of publically available WGS data. Additionally, we have reviewed the application of WGS to the study of Mtb and discuss those areas still to be addressed, moving from global (phylogeography), to local (transmission chains and circulating strain diversity), to the single patient (clonal heterogeneity) and to the bacterium itself (evolutionary studies). Finally, we discuss the current WGS approaches, their strengths and limitations. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,453 |
Agrobacterium-mediated plant galls are often misdiagnosed as nematode-mediated knots, even by experts, because the gall symptoms in both conditions are very similar. In the present study, we developed biosensor strains based on agrobacterial opine metabolism that easily and simply diagnoses Agrobacterium-induced root galls. Our biosensor consists of Agrobacterium mannitol (ABM) agar medium, X-gal, and a biosensor. The working principle of the biosensor is that exogenous nopaline produced by plant root galls binds to NocR, resulting in NocR/nopaline complexes that bind to the promoter of the nopaline oxidase gene (nox) operon and activate the transcription of noxB-lacZY, resulting in readily visualized blue pigmentation on ABM agar medium supplemented with X-gal (ABMX-gal). Similarly, exogenous octopine binds to OccR, resulting in OoxR/octopine complexes that bind to the promoter of the octopine oxidase gene (oox) operon and activate the transcription of ooxB-lacZY, resulting in blue pigmentation in the presence of X-gal. Our biosensor is successfully senses opines produced by Agrobacterium-infected plant galls, and can be applied to easily distinguish Agrobacterium crown gall disease from nematode disease. | Crown gall is a plant tumor disease caused by the specific action of the bacteriumAgrobacterium tumefaciens. In the current literature its host range is not clearly defined or is thought to be restricted to the dicotyledonous class of the angiosperms. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,454 |
Pathogenicity of three entomogenous fungi, Beauveria bassiana , Fusarium oxysporum and Metarhizium anisopliae var. anisopliae were conducted against eleven different insect pests of sugarcane in the laboratory. Of these, B. bassiana was found most pathogenic to larvae of Chilo auricilius , Chilo infuscatellus and Sesamia inferens ; nymphs and adults of Cavelerius sweeti , adults of Phytoscaphus sp. and Astychus lateralis , and grubs of Holotrichia consanguinea . Metarhizium anisopliae was found pathogenic to larvae of C. auricilius , C. infuscatellus and S. inferens ; adults of Phytoscaphus sp. and A. lateralis , and adults and nymphs of Pyrilla perpusilla . Fusarium oxysporum was found effective against larvae of C. auricilius , C. infuscatellus and S. inferens ; and adults and nymphs of P. perpusilla . | SUMMARy Increased content of pesticides in food chain resulted in using microorganisms as agents of biological control. The potato cyst nematodes (PCN) - Globodera pallida and G. rostochiensis belong to the group of the most important parasites - the quarantine organisms. The external and internal area of a cyst harbor numerous fungal and bacterial species. The aim of this study was to identify antagonistic fungi associated with some PCN populations from Serbia. Fungal antagonists of potato cyst nematodes have not been previously investigated in our country. The diversity of PCN fungal antagonists is not reflected only at the species level but also at the level of higher taxonomic categories. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,455 |
After optimizing the conditions, including nutrients and temperature, swarming of Bacillus subtilis 3610 was obtained on a synthetic, fully defined medium. The swarms formed highly branched (dendritic) patterns, generated by successive waves of moving cells. A detailed microscopic in situ analysis of swarms 1 and 2 revealed varied cell morphologies and a remarkable series of events, with cells assembling into different ‘structures’, as the architecture of the swarm developed. Long filamentous cells begin to form before the onset of the first swarming (11 h) and are again observed at later stages in the interior of individual mature dendrites. Swarm 2, detected at 18–22 h, is accompanied by the rapid movement of a wave of dispersed (non-filamentous) cells. Subsequently at the forward edge of this swarm, individual cells begin to cluster together, gradually forming de novo the shape of a dendrite tip with progressive lengthening of this new structure ‘backwards' towards the swarm centre. In both swarms 1 and 2, after the initial clustering of cells, there is the progressive appearance of a spreading monolayer of rafts (4–5 non-filamented cells, neatly aligned). The alternative possible roles of the rafts in the development of the swarm are discussed. | Many bacteria can adopt organized, sessile, communal lifestyles. The gram-positive bacterium, Bacillus subtilis ,forms biofilms on solid surfaces and at air-liquid interfaces, and bi | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,456 |
ABSTRACT Dynamics of dispersal of the bacteria that causes citrus canker (Xanthomonas axonopodis pv. citri) were assessed in simulated wind-driven rain splash. The wind/rain-splash events were simulated using electric blowers to generate turbulent wind (15 to 20 m s-1) and sprayer nozzles to produce water droplets entrained in the wind flow. The splash was blown at an inoculum source of canker-infected trees 1 m downwind. The splash downwind of the source of the infected trees was collected by vertical panel samplers and funnel samplers. The duration over which bacteria were dispersed in spray was assessed in continuous wind at intervals from 0 to 52 h after commencing the simulated rain splash event. In one experiment on 11 February 2003, a total of 1.48 × 106 bacteria were collected by panels 1 m downwind from the inoculum source during the first 10 min of dispersal, but the numbers declined to 3.60 × 105 bacteria after 1 h and ranged between 1.42 × 105 and 1.93 × 104 up to 52 h. In a more detailed stud... | Asiatic citrus canker is a disease that poses a significant hazard to commercial citrus production. This article examines spatiotemporal models of the risks of citrus canker transmission. Models evaluate risks and are used to price annual contracts, which would pay producers a prespecified indemnity in the event that their grove is found to be infected with canker. Implications for risk management policy are discussed. Copyright 2009, Oxford University Press. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,457 |
The suitability of H2S field test to detect fecal contamination in drinking water was assessed by analysing 635 water samples from various sources at room temperature and at 37°C after 18, 24, and 48 h of incubation. The H2S test showed 216, 85, 96 and 85% correlation with Eijkman test, membrane filter technique, most probable number (MPN) test for coliform and membrane filter technique (MFT),respectively. Hence the test can be used for detection of fecal contamination in drinking water in the field where laboratory facilities are limited | Twenty samples of drinking water from five different distribution line sources in Lima, Peru, were tested for coliphage content. Bacteriological quality of these waters was assessed by a variety of techniques, Presence/Absence (P/A) test, H2S paper strip test and total and fecal coliform MPN tests. In 47% of the samples, coliphage were the only indicator organisms present. The incidence of coliphage in these potable water supplies reflects the probability of human pathogenic virus also surviving the treatment process. In the bacteriological tests the P/A and H2S paper strip techniques were found to be equally or more sensitive indicators of the presence of coliform/fecal coliform bacteria than the TC/FC MPN tests were. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,458 |
Muscle growth was investigated in Harpagifer species with sub-Antarctic (Harpagifer bispinis, environmental temperature (ET) 4-11°C) and Antarctic (Harpagifer antarcticus, ET -1.5 to +1°C) distributions. The trunk musculature of 1 d-old larval H. antarcticus, 0.84-0.93 cm standard length (SL), contained 1025 :t 76 fast muscle fibres per cross-section (Mean :t SE, n=6). Zones of ::: muscle fibre formation were restricted to the dorsal and ventral cones of the myotomes. The maximum ::: diameter of fast muscle fibres increased linearly with standard length and was 270 ~m at 10.1 cm SL. ::: The density of myogenic progenitor cells, determined by staining sections for c-met and myogenic regulatory factors (MyoD, myf-5, myf-6, myogenin), decreased with increasing body length. The number and size distribution of fast muscle fibres with respect to standard length was indistinguishable in H. bispinis and H. antarcticus, although the number of c-met+ve cells and the maximum body size was higher in the Antarctic species. Comparative studies indicate that a large maximum fibre diameter ::: is a general characteristic of the Notothenioideii. This may reflect the radiation from a small bodied ::: ancestor with a relatively low fibre number, although adaptive explanations related to metabolic rate ::: reduction cannot be excluded. | Feeding metabolism and the activation of myogenic progenitor cells were investigated in the fast myotomal muscle of the sub-Antarctic fish Hapagifer bispinis acclimatized to either simulated summer (10 degrees C; 18 h:6 h light:dark) or simulated winter (5 degrees C; 6 h:18 h light:dark) conditions. Ingestion of a single meal equivalent to 10% and 15% of body mass in simulated winter and summer groups, respectively, resulted in an average 2.6-fold and 3.6-fold increase in oxygen consumption, declining to 75% of peak values after 63 h and 46 h. In fasted individuals, the number of myogenic progenitor cells, identified by the expression of c-met, was not significantly different between simulated summer and winter fish, representing 6.6% and 5.8% of total myonuclei, respectively. However, the number of cells expressing myogenin was higher whereas the expression of MyoD was lower in winter than in summer groups. The ingestion of a single meal under winter and summer treatment regimes resulted in a significant increase in the number of cells expressing MyoD (51% and 111%) and PCNA (88% and 140%, respectively). This was followed by an increase in the abundance of c-met (74 and 85%) and myogenin (42 and 97%, respectively) positive cells, indicating the production of new myogenic progenitor cells and the commitment to differentiation of a number of them. These results show that the proliferation of myogenic progenitor cells can be induced by feeding in teleost fishes and that temperature and photoperiod influence the expression of myogenic regulatory factors. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,459 |
A method of critical evaluation of comet assay test results is proposed. This method is based on representing frequency histograms of tail moments and %DNA in the tail with the use of the unsymmetrical Weibull distribution. The distribution is fully characterized by two parameters: shape ( α ) and scale ( β ). Coefficients of variation and confidence intervals of the parameters have been determined. | The comet or single-cell gel electrophoresis assay is now widely used in regulatory, mechanistic and biomonitoring studies using a range of in vitro and in vivo systems. Each of these has issues associated with the experimental design which determine to a large extent the statistical analyses than can be used. A key concept is that the experimental unit is the smallest 'amount' of experimental material that can be randomly assigned to a treatment: the animal for in vivo studies and the culture for in vitro studies. Biomonitoring studies, being observational rather than experimental, are vulnerable to confounding and biases. Critical factors in any statistical analysis include the identification of suitable end points, the choice of measure to represent the distribution of the comet end point in a sample of cells, estimates of variability between experimental units and the identification of the size of effects that could be considered biologically important. Power and sample size calculations can be used in conjunction with this information to identify optimum experimental sizes and provide help in combining the results of statistical analyses with other information to aid interpretation. Interpretation based upon the size of effects and their confidence intervals is preferred to that based solely upon statistical significance tests. Statistical issues associated with the design and subsequent analyses of current validation studies for the comet assay include the identification of acceptable levels of intra- and inter-laboratory repeatability and reproducibility and criteria for dichotomizing results into positive or negative. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,460 |
A taxonomically diverse fossil fauna with small and medium size vertebrates was recovered from the Late Cretaceous (Maestrichtian) age El Molino Formation at Tiupampa, southcentral Bolivia. Among the known taxa, many new to science, are selacians, actinopterygians, lungfish, amphibians, lizards, snakes, turtles, crocodiles, and several mammals. This finding provides a unique and previously unavailable opportunity to understand debated aspects of the phylogenetic and biogeographic histories of these groups. | The middle Palaeocene of Sao Jose de Itaborai (State of Rio de Janeiro, Brazil) has yielded a very rich and diverse snake fauna which inludes Madtsoiidae, Aniliidae s.l., Boidae, Tropidophiidae s.l., Booidea incertae sedis, and Russellophiidae. The present article (part I) deals with Madtsoiidae and Aniliidae s.l. Madtsoiidae are represented by many vertebrae and a few skull bones. They comprise one new species assigned to the genus Madtsoia (M. camposi sp. nov.). However, the definition of the genus Madtsoia is unsatisfactory and the generic allocation might be provisional. A few elements, vertebrae only, belong to the Aniliidae s.l. Two taxa are referred to this latter group: Coniophis cf. C. precedens and Hoffstetterella brasiliensis gen. et sp. nov. The forthcoming part II will deal with Boidae. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,461 |
RNA recognition by natural aminoglycoside antibiotics depends on the 2-deoxystreptamine (2-DOS) scaffold which participates in specific hydrogen bonds with the ribosomal decoding-site target. Three-dimensional structure information has been used for the design of azepane-monoglycosides, building blocks for novel antibiotics in which 2-DOS is replaced by a heterocyclic scaffold. Azepane-glycosides showed target binding and translation inhibition in the low micromolar range and inhibited growth of Staphylococcus aureus, including aminoglycoside-resistant strains. | We report the structure-guided discovery, synthesis, and initial characterization of 3,5-diamino-piperidinyl triazines (DAPT), a novel translation inhibitor class that targets bacterial rRNA and exhibits broad-spectrum antibacterial activity. DAPT compounds were designed as structural mimetics of aminoglycoside antibiotics which bind to the bacterial ribosomal decoding site and thereby interfere with translational fidelity. We found that DAPT compounds bind to oligonucleotide models of decoding-site RNA, inhibit translation in vitro, and induce translation misincorporation in vivo, in agreement with a mechanism of action at the ribosomal decoding site. The novel DAPT antibacterials inhibit growth of gram-positive and gram-negative bacteria, including the respiratory pathogen Pseudomonas aeruginosa, and display low toxicity to human cell lines. In a mouse protection model, an advanced DAPT compound demonstrated efficacy against an Escherichia coli infection at a 50% protective dose of 2.4 mg/kg of body weight by single-dose intravenous administration. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,462 |
Olive (Olea europaea L.) is one of the most important crops in the Mediterranean region. The expansion of cultivation in areas irrigated with low quality and saline water has negative effects on growth and productivity however the investigation of the molecular basis of salt tolerance in olive trees has been only recently initiated. To this end, we investigated the molecular response of cultivar Kalamon to salinity stress using next-generation sequencing technology to explore the transcriptome profile of olive leaves and roots and identify differentially expressed genes that are related to salt tolerance response. Out of 291,958 obtained trimmed reads, 28,270 unique transcripts were identified of which 35% are annotated, a percentage that is comparable to similar reports on non-model plants. Among the 1,624 clusters in roots that comprise more than one read, 24 were differentially expressed comprising 9 down- and 15 up-regulated genes. Respectively, inleaves, among the 2,642 clusters, 70 were identified as differentially expressed, with 14 down- and 56 up-regulated genes. Using next-generation sequencing technology we were able to identify salt-response-related transcripts. Furthermore we provide an annotated transcriptome of olive as well as expression data, which are both significant tools for further molecular studies in olive. | *Summary All above-ground plant organs are derived from shoot apical meristems (SAMs). Global analyses of gene expression were conducted on maize (Zea mays L.) SAMs to identify genes preferentially expressed in the SAM. The SAMs were collected from 14-day-old B73 seedlings via laser capture microdissection (LCM). The RNA samples extracted from LCM-collected SAMs and from seedlings were hybridized to microarrays spotted with 37 660 maize cDNAs. Approximately 30% (10 816) of these cDNAs were prepared as part of this study from manually dissected B73 maize apices. Over 5000 expressed sequence tags (ESTs) (about 13% of the total) were differentially expressed (P < 0.0001) between SAMs and seedlings. Of these, 2783 and 2248 ESTs were up- and down-regulated in the SAM, respectively. The expression in the SAM of several of the differentially expressed ESTs was validated via quantitative RT-PCR and/or in situ hybridization. The up-regulated ESTs included many regulatory genes including transcription factors, chromatin remodeling factors and components of the gene-silencing machinery, as well as about 900 genes with unknown functions. Surprisingly, transcripts that hybridized to 62 retrotransposon-related cDNAs were also substantially up-regulated in the SAM. Complementary DNAs derived from the LCM-collected SAMs were sequenced to identify additional genes that are expressed in the SAM. This generated around 550 000 ESTs (454-SAM ESTs) from two genotypes. Consistent with the microarray results, approximately 14% of the 454-SAM ESTs from B73 were retrotransposon-related. Possible roles of genes that are preferentially expressed in the SAM are discussed. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,463 |
Mixing with locust bean gum (LBG) induces obvious gel-like character in very dilute solutions of K+ kappa-carragenan (<0.01 w/w in 100 mM KCl). At higher concentration (0.085%), addition of LBG (0.036%) gives a shoulder on the high-temperature side of the DSC (differential scanning calorimetry) exotherm associated with the carrageenan disorder-order transition, with an accompanying increase in gelation temperature and enhancement in gel strength (storage modulus, G'). On substitution of LBG by konjac glucomannan (KM) the shoulder in DSC converts to a discernable peak. Van't Hoff analysis of optical rotation data indicates that the high-temperature thermal processes could arise from association of LBG or KM chains to the carrageenan double helix as it forms, with the main transition at lower temperature corresponding to ordering of surplus carrageenan. With kappa-carrageenan in the nongelling tetra-menthylammonium salt form, addition of LBG causes no detectable change in DSC; rheological enhancement high concentration (1% w/w) is limited to development of a very tenuous network, and in dilute solution a decrease in viscosity is observed. Agarose shows only a very slight increase in the disorder-order transition temperature on addition of KM, and it shows no detectable change in DSC; rheological enhancement at high concentration (1% w/w) is limited to development of a very tenuous network, and in dilute solution a decrease in viscosity is observed. Agarose shows only a very slight increase in the disorder-order transition temperature on addition of KM, and it shows no detectable change with LBG. These observations are interpreted as showing that efficient bing-helices, but that extensive aggregation restrict synergistic interaction by competition with heterotypic association. (C) 1995 John Wiley & Sons, Inc. | : Mixtures of κ-carrageenan plus other hydrocolloids (locust bean, guar, xanthan, iota-carrageenan, sodium carboxymethylcellulose, and sodium alginate) were examined for their effects on the mechanical and water holding properties of heat-induced gels made from washed blue whiting mince. Gel structure and thermal behavior were also studied. No synergistic effect was detectable through functional properties except for the mixture of κ-carrageenan with locust bean gum. Light microscopy revealed that κ-carrageenan and xanthan mixed locally with locust bean at its rich domains. κ-carrageenan and xanthan presented interactions with the protein matrix, which were more discernible in the first case. Differential scanning calorimetry (DSC) revealed faint interactions for the mixtures of κ-carrageenan with locust bean and with xanthan, and weakly synergistic gelling effects between the last two hydrocolloids. The blend of κ-carrageenan with sodium alginate exhibited thermally strong synergistic interactions but no particular effects were induced on corresponding functional properties. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,464 |
Isozyme characters of creatine kinase, including the number of genes, the specificity of tissue expression, and the ability to form interlocus and intralocus heterodimers, were reevaluated for their potential for systematics applications among the reptiles. The gene number character has limited application because it is apomorphic only for chelid turtles. The intralocus heterodimer formation character has limited systematic value because of the infrequency of heterozygosity. Likewise, the interlocus heterodimer formation character has limited systematic value because of the infrequency of both Ck-A and Ck-C products being expressed in the same tissue. Differences in patterns of specificity of tissue expression hold the greatest potential for applications in reptilian systematics. | Several classes of isozyme characters are recognized including the number of genes that control a given enzyme system, intralocus and interlocus heteropolymer assembly, tissue-specific gene expression, developmental patterns of enzyme expression, and post-translational modification of gene products. All of these characters can be of value in systematic studies although few applications have been made to date; some of the more robust examples are recognized. Isozyme characters should be evaluated in terms of both their advantages and limitations. The level of universality at which they are used is group-specific. Tissue-specific gene expression data may be of the widest applicability in systematic studies. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,465 |
Willows (Salix) and poplars (Populus) are dioecious plants in Salicaceae family. Sex chromosome in poplar genome was consistently reported to be associated with chromosome XIX. In contrast to poplar, this study revealed that chromosome XV was sex chromosome in willow. Previous studies revealed that both ZZ/ZW and XX/XY sex-determining systems could be present in some species of Populus. In this study, sex of S. suchowensis was found to be determined by the ZW system in which the female was the heterogametic gender. Gene syntenic and collinear comparisons revealed macrosynteny between sex chromosomes and the corresponding autosomes between these two lineages. By contrast, no syntenic segments were found to be shared between poplar's and willow's sex chromosomes. Syntenic analysis also revealed substantial chromosome rearrangements between willow's alternate sex chromatids. Since willow and poplar originate from a common ancestor, we proposed that evolution of autosomes into sex chromosomes in these two lineages occurred after their divergence. Results of this study indicate that sex chromosomes in Salicaceae are still at the early stage of evolutionary divergence. Additionally, this study provided valuable information for better understanding the genetics and evolution of sex chromosome in dioecious plants. | The 18S-28S rDNA and 5S rDNA loci in Populus trichocarpa were localized using fluorescent in situ hybridization (FISH). Two 18S-28S rDNA sites and one 5S rDNA site were identified a | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,466 |
Immature inflorescences of Triticum tauschii (Coss.) Schmal. × Secale cereale L. cv. 'Puma' hybrids were induced to callus on Kao's medium supplemented with 5 mg/L 2-4-dichlorophenoxyacetic acid (2.4-D). Plantlets with diploid and tetraploid chromosome numbers were subsequently regenerated from the callus. Chromosome pairing in the diploid regenerants and tetraploid amphiploids was incomplete and the plants were sterile.Key words: Triticum, Secale, chromosome pairing, callus, tissue culture. | This paper shows the results of effective uses of a molecular cytogenetics toolbox and molecular marker to transfer leaf rust resistance genes from Aegilops tauschii × Secale cereale (DDRR, 2n = 4x = 28) amphiploid forms to triticale cv. Bogo (AABBRR, 2n = 6x = 42). The molecular markers of resistance genes and in situ hybridization analysis of mitotic metaphase of root meristems confirmed the stable inheritance of chromosome 3D segments carrying Lr32 from the BC2F2 to the BC2F5 generation of (Ae. tauschii × S. cereale) × triticale hybrids. The chromosome pairing analysis during metaphase I of meiosis of BC2F4 and BC2F5 hybrids showed increasing regular bivalent formation of 3D chromosome pairs and decreasing number of univalents in subsequent generations. The results indicate that using amphiploid forms as a bridge between wild and cultivated forms can be a successful technology to transfer the D-genome chromatin carrying leaf rust resistance genes into triticale. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,467 |
Interactions between bacteria and fungi cover a wide range of incentives, mechanisms and outcomes. The genus Collimonas consists of soil bacteria that are known for their antifungal activity and ability to grow at the expense of living fungi. In non-contact confrontation assays with the fungus Aspergillus niger, Collimonas fungivorans showed accumulation of biomass concomitant with inhibition of hyphal spread. Through microarray analysis of bacterial and fungal mRNA from the confrontation arena, we gained new insights into the mechanisms underlying the fungistatic effect and mycophagous phenotype of collimonads. Collimonas responded to the fungus by activating genes for the utilization of fungal-derived compounds and for production of a putative antifungal compound. In A. niger, differentially expressed genes included those involved in lipid and cell wall metabolism and cell defense, which correlated well with the hyphal deformations that were observed microscopically. Transcriptional profiles revealed distress in both partners: downregulation of ribosomal proteins and upregulation of mobile genetic elements in the bacteria and expression of endoplasmic reticulum stress and conidia-related genes in the fungus. Both partners experienced nitrogen shortage in each other's presence. Overall, our results indicate that the Collimonas/Aspergillus interaction is a complex interplay between trophism, antibiosis and competition for nutrients. | We assessed the utility of fluorescent in situ hybridization (FISH) in the screening of clone libraries of (meta)genomic or environmental DNA for the presence and expression of bacterial ribosomal RNA (rRNA) genes. To establish proof-of-principle, we constructed a fosmid-based library in Escherichia coli of large-sized genomic DNA fragments of the mycophagous soil bacterium Collimonas fungivorans, and hybridized 768 library clones with the Collimonas-specific fluorescent probe CTE998-1015. Critical to the success of this approach (which we refer to as large-insert library FISH or LIL-FISH) was the ability to induce fosmid copy number, the exponential growth status of library clones in the FISH assay and the use of a simple pooling strategy to reduce the number of hybridizations. Twelve out of 768 E. coli clones were suspected to harbour and express Collimonas 16S rRNA genes based on their hybridization to CTE998-1015. This was confirmed by the finding that all 12 clones were also identified in an independent polymerase chain reaction-based screening of the same 768 clones using a primer set for the specific detection of Collimonas 16S ribosomal DNA (rDNA). Fosmids isolated from these clones were grouped by restriction analysis into two distinct contigs, confirming that C. fungivorans harbours at least two 16S rRNA genes. For one contig, representing 1-2% of the genome, the nucleotide sequence was determined, providing us with a narrow but informative view of Collimonas genome structure and content. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,468 |
Fluoroquinolones are an important class of wide‐spectrum antibacterial agents. The first quinolone described was nalidixic acid, which showed a narrow spectrum of activity. The evolution of quinolones to more potent molecules was based on changes at positions 1, 6, 7 and 8 of the chemical structure of nalidixic acid. Quinolones inhibit DNA gyrase and topoisomerase IV activities, two enzymes essential for bacteria viability. The acquisition of quinolone resistance is frequently related to (i) chromosomal mutations such as those in the genes encoding the A and B subunits of the protein targets (gyrA, gyrB, parC and parE), or mutations causing reduced drug accumulation, either by a decreased uptake or by an increased efflux, and (ii) quinolone resistance genes associated with plasmids have been also described, i.e. the qnr gene that encodes a pentapeptide, which blocks the action of quinolones on the DNA gyrase and topoisomerase IV; the aac(6′)‐Ib‐cr gene that encodes an acetylase that modifies the amino group of the piperazin ring of the fluoroquinolones and efflux pump encoded by the qepA gene that decreases intracellular drug levels. These plasmid‐mediated mechanisms of resistance confer low levels of resistance but provide a favourable background in which selection of additional chromosomally encoded quinolone resistance mechanisms can occur. | We have identified a second resistance-nodulation-cell division (RND)-type efflux pump, AdeIJK, in clinical isolate Acinetobacter baumannii BM4454. The adeI, adeJ, and adeK genes encode, respectively, the membrane fusion, RND, and outer membrane components of the pump. AdeJ belongs to the AcrB protein family (57% identity with AcrB from Escherichia coli). mRNA analysis by Northern blotting and reverse transcription-PCR indicated that the genes were cotranscribed. Overexpression of the cloned adeIJK operon was toxic in both E. coli and Acinetobacter. The adeIJK genes were detected in all of the 60 strains of A. baumannii tested. The two latter observations suggest that the AdeIJK complex might contribute to intrinsic but not to acquired antibiotic resistance in Acinetobacter. To characterize the substrate specificity of the pump, we have constructed derivatives of BM4454 in which adeIJK (strain BM4579), adeABC (strain BM4561), or both groups of genes (strain BM4652) were inactivated by deletion-insertion. Determination of the antibiotic susceptibility of these strains and of BM4652 and BM4579, in which the adeIJK operon was provided in trans, indicated that the AdeIJK pump contributes to resistance to beta-lactams, chloramphenicol, tetracycline, erythromycin, lincosamides, fluoroquinolones, fusidic acid, novobiocin, rifampin, trimethoprim, acridine, safranin, pyronine, and sodium dodecyl sulfate. The chemical structure of these molecules suggests that amphiphilic compounds are the preferred substrates. The AdeABC and AdeIJK efflux systems contributed in a more than additive fashion to tigecycline resistance. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,469 |
Leishmania species cause a spectrum of human diseases in tropical and subtropical regions of the world. We have sequenced the 36 chromosomes of the 32.8-megabase haploid genome of Leishmania major (Friedlin strain) and predict 911 RNA genes, 39 pseudogenes, and 8272 protein-coding genes, of which 36% can be ascribed a putative function. These include genes involved in host-pathogen interactions, such as proteolytic enzymes, and extensive machinery for synthesis of complex surface glycoconjugates. The organization of protein-coding genes into long, strand-specific, polycistronic clusters and lack of general transcription factors in the L. major, Trypanosoma brucei , and Trypanosoma cruzi (Tritryp) genomes suggest that the mechanisms regulating RNA polymerase II–directed transcription are distinct from those operating in other eukaryotes, although the trypanosomatids appear capable of chromatin remodeling. Abundant RNA-binding proteins are encoded in the Tritryp genomes, consistent with active posttranscriptional regulation of gene expression. | The recent completion of five new protozoan parasite genomes should lead to an improved understanding of their biology and, through comparative genomics, shed light on protozoan genome diversity and evolution. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,470 |
Bacteriocarotenoids, a group of carotenes isolated from bacteria, were extracted from Rhodopseudomonaspalustris, isolated from a hot spring in Pedas, Malaysia. The extracts were refined, then anticarcinoma efficacy and antioxidative potentials of two of the inclusive bacteriocarotenoids (β-carotene and Rhodopin) were tested against three cancer cell lines (MCF-7, MDA-MB and Hep-G2) and a Vero cell line. MTT((3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide, FRAP (ferric-reducing antioxidant power) and DPPH (2,2-diphenyl-2-picrylhydrazyl) assays were used along with in-vitro assays for cell proliferationmeasurement and antioxidative potentials. Results showed a reduction in proliferation of cells with low level of toxicity in the carcinoma cell lines. DPPH and FRAP tests did show antioxidant properties. Dose by time dependency analysis indicated a dosage of 25 µg/mL of refined bacteriocarotenoids virtually was as effective in 48 hours as with 12.5 µg/mL of bulk unseparated bacteriocarotenoids in 72 hours of treatment. These observations were noted in all tested carcinoma cell lines. Therefore at the dosage of 25 µg/mL of bulk- bacteriocarotenoids, results also suggested time-dependent inhibitory effects which were consistent with long but safe exposure time. Inhibitory effects were more pronounced at higher dosage, the effects were more pronounced in treatments with both isolate and bulk-bacteriocarotenoids at varied dosage. | A gene transfer system for Rhodopseudomonas viridis was established which uses conjugation with Escherichia coli S17-I as the donor and mobilizable plasmids as vectors. Initially, plasmids of the incompatibility group P1 (pRK290 and pRK404) were used. The more effective shuttle vectors between E. coli and R. viridis, pKV1 and pKVS1, were derived from plasmid pBR322 and showed the highest conjugation frequency (10(-2] thus far demonstrated in purple bacteria. It was also demonstrated that Rhizobium meliloti can be used as a donor for conjugation with R. viridis. From a genomic cosmid library of R. viridis constructed in the vector pHC79, clones that coded for subunits H (puh operon), L, M and cytochrome c (puf operon) of the photosynthetic reaction center were isolated and characterized. For linkage of the two operons on the genome, cosmids that overlapped with the operon-carrying clones were identified. The relative positions of the two operons could not be determined, but the operons must be more than 100 kilobase pairs apart. Thus, the genomic organization of the reaction center in R. viridis is different from that of Rhodobacter capsulatus, for which a distance of about 39 kilobase pairs was determined. From a spontaneous mutant of R. viridis that is resistant to the herbicide terbutryn, the puf operon was cloned in pKVS1 and transferred by conjugation into R. viridis wild-type cells. The resulting exconjugants were resistant to the herbicide, which demonstrated that the puf operon on pKVS1 constructions was functionally expressed in R. viridis. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,471 |
Lactic acid bacteria (LAB) produce exopolysaccharides (EPS) that are important for biofilm formation in the mammalian oral cavity and gastrointestinal tract. Sucrose is a well-known substrate for homo-EPS formation by Lactobacillus reuteri glucansucrases (GS). Starch is the main fermentable carbohydrate in the human diet, and often consumed simultaneously with sucrose. Recently we have characterized L. reuteri strains that also possess 4,6-α-glucanotransferases (4,6-α-GTases) that act on starch yielding isomalto-/malto-polysaccharides. In this study we have characterized the EPS formed by L. reuteri 35-5 cells and enzymes from sucrose plus starch. The data show that both in vivo and in vitro the L. reuteri 35-5 GS and 4,6-α-GTase enzymes, incubated with sucrose plus starch, cross-react and contribute to synthesis of the final hybrid EPS products. This may have strong effects on the EPS functional properties, influence biofilm formation, and affect the relationship between dietary intake of sucrose and starch, and dental caries formation. | The interaction of sucrose and starch with bacterial glucosyltransferases and human salivary amylase may enhance the pathogenic potential of Streptococcus mutans within biofilms by influencing the structural organization of the extracellular matrix and modulating the expression of genes involved in exopolysaccharide synthesis and specific sugar transport and two-component systems. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,472 |
Many crops contain domestication genes that are generally considered to lower fitness of crop–wild hybrids in the wild environment. Transgenes placed in close linkage with such genes would be less likely to spread into a wild population. Therefore, for environmental risk assessment of GM crops, it is important to know whether genomic regions with such genes exist, and how they affect fitness. We performed quantitative trait loci (QTL) analyses on fitness(-related) traits in two different field environments employing recombinant inbred lines from a cross between cultivated Lactuca sativa and its wild relative Lactuca serriola. We identified a region on linkage group 5 where the crop allele consistently conferred a selective advantage (increasing fitness to 212% and 214%), whereas on linkage group 7, a region conferred a selective disadvantage (reducing fitness to 26% and 5%), mainly through delaying flowering. The probability for a putative transgene spreading would therefore depend strongly on the insertion location. Comparison of these field results with greenhouse data from a previous study using the same lines showed considerable differences in QTL patterns. This indicates that care should be taken when extrapolating experiments from the greenhouse, and that the impact of domestication genes has to be assessed under field conditions. | Over the last 15 years a wealth of linkage maps and quantitative trait loci (QTL) mapping results have become available. The pace of generating this genetic information is accelerating owing to advances in molecular marker technology and the development of software for linkage analysis and QTL mapping. A graphical presentation of this information is often needed, both for publication purposes and for easy and intuitive interpretation. However, the development of tools for the graphical presentation of linkage maps and QTLs has lagged behind. DrawMap (Van Ooijen 1994) was an early program capable of drawing genetic linkage maps. However, the output of this program was not very well suited for use in modern word processors and presentation software. Authors in this field have therefore, of necessity, resorted to the use of general graphics software to compose charts of their linkage and QTL maps. This is always a laborious process, with sometimes disappointing results. Also, each time a map is recalculated when new data become available, this process has to be repeated. For this reason I developed MapChart, a software package that takes as input the linkage and QTL data and generates charts of linkage maps and QTLs. These charts can easily be exported to word processing or presentation software. The charts are exported as vector graphics (Windows enhanced metafiles) rather than bitmaps, which makes them easy to rescale and to edit further if desired. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,473 |
Annually, large amounts of cod and haddock viscera (minus livers) are discarded by the fishing industry. The chemical composition of this offal makes it a possible raw material for production of additives to animal feeds. Various processes that would lead to a method of production of such preparations were investigated. Autolysis of fresh viscera in the presence of sodium nitrite as a preservative was found most attractive. Optimum conditions for this process were established and various methods of drying these autolysates were investigated. | Individual fish processing waste stream components can be used to make feed ingredients or other products. Waste stream components obtained from commercial fish processing plants included heads, viscera, frames, and skins from Alaska pollock (Theragra chalcogramma) and Pacific cod (Gadus macrocephalus); and heads, and viscera from pink salmon (Oncorhynchus gorbuscha). The protein content of heads from all three species ranged from 13.9 to 16.4%; and the fat content ranged from 0.9 to 10.9%. Viscera protein content ranged from 13.0 to 15.3%, and the fat content from 2.0 to 19.1%. After heating to 85C the percent soluble protein in salmon heads was different (P < 0.05) from pollock or cod heads. Percent soluble protein of pollock and cod skin increased 8 fold (P < 0.05) after the 85C heat treatment. Connective tissue content was calculated from chemical determination of hydroxyproline content, and large differences in percent connective tissue content were found (1 % for pollock viscera to 46% for skin). Estimated rat PER values ranged from a low of 2.1 for skin to a high of 3.1 for viscera and fillet samples (P < 0.05). | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,474 |
Bacterial soft rot is a disease complex caused by multiple genera of gram-negative and gram-positive bacteria, with Dickeya and Pectobacterium being the most widely studied soft-rot bacterial pathogens. In addition to soft rot, these bacteria also cause blackleg of potato, foot rot of rice, and bleeding canker of pear. Multiple Dickeya and Pectobacterium species cause the same symptoms on potato, complicating epidemiology and disease resistance studies. The primary pathogen species present in potato-growing regions differs over time and space, further complicating disease management. Genomics technologies are providing new management possibilities, including improved detection and biocontrol methods that may finally allow effective disease management. The recent development of inbred diploid potato lines is also having a major impact on studying soft-rot pathogens because it is now possible to study soft-rot disease in model plant species that produce starchy vegetative storage organs. Together, these new discoveries have changed how we face diseases caused by these pathogens. | "The Great Five" (GF) is an artificial bacterial consortium developed to protect potato tubers from soft rot caused by Pectobacterium spp. and Dickeya spp. To investigate the commercialization potential of the GF, we developed liquid and powder formulations of the consortium and of each of the comprising strains (Serratia plymuthica strain A294, Enterobacter amnigenus strain A167, Rahnella aquatilis strain H145, Serratia rubidaea strain H440, and S. rubidaea strain H469). To form powders, the cells were lyophilized using a newly developed lyoprotectant: Reagent PS. The shelf life of the formulations stored at 8 and 22 °C was monitored for a period of 12 months. The longest shelf life was obtained for formulations stored at 8 °C; however, the viability of all formulations was negatively affected at 22 °C. For the consortium, a 2.5 log10 cfu (colony forming units) drop in cell number was recorded for the liquid formulation after 6 months, while in case of powders, the drop remained below 1 log10 cfu following 12 months. The ability of the powder formulations to preserve biocontrol activity of the consortium was tested on potato tubers treated with the formulations and a mixture of the soft rot pathogens. The inoculated tubers were stored for 6 months at 8 °C to mimic commercial storage conditions. Soft rot severity and incidence on potato tubers treated with formulations were significantly reduced (62-75% and 48-61%, respectively) in comparison to positive control with pathogens alone. The potential use of the newly developed formulations of "The Great Five" for the biocontrol of soft rot is discussed. KEY POINTS : • An innovative reagent to protect bacterial cells during lyophilization was developed. • Powder formulations of "The Great Five" prolonged its shelf life. • The powder-formulated "The Great Five" was active against soft rot bacteria on potato tubers. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,475 |
Background: Leafhoppers (Hemiptera: Cicadellidae) are plant-phloem feeders that are known for their ability to vector plant pathogens. The black-faced leafhopper (Graminella nigrifrons) has been identified as the only known vector for the Maize fine streak virus (MFSV), an emerging plant pathogen in the Rhabdoviridae. Within G. nigrifrons populations, individuals can be experimentally separated into three classes based on their capacity for viral transmission: transmitters, acquirers and non-acquirers. Understanding the molecular interactions between vector and virus can reveal important insights in virus immune defense and vector transmission. Results: RNA sequencing (RNA-Seq) was performed to characterize the transcriptome of G. nigrifrons. A total of 38,240 ESTs of a minimum 100 bp were generated from two separate cDNA libraries consisting of virus transmitters and acquirers. More than 60% of known D. melanogaster, A. gambiae, T. castaneum immune response genes mapped to our G. nigrifrons EST database. Real time quantitative PCR (RT-qPCR) showed significant down-regulation of three genes for peptidoglycan recognition proteins (PGRP – SB1, SD, and LC )i nG. nigrifrons transmitters versus control leafhoppers. Conclusions: Our study is the first to characterize the transcriptome of a leafhopper vector species. Significant sequence similarity in immune defense genes existed between G. nigrifrons and other well characterized insects. The down-regulation of PGRPs in MFSV transmitters suggested a possible role in rhabdovirus transmission. The results provide a framework for future studies aimed at elucidating the molecular mechanisms of plant virus vector competence. | Publisher Summary The Fulgoroidea, Cicadellidae and Membracidae are the most likely families in which vectors are found, because they feed primarily on the phloem. This chapter discusses the semipersistent transmission of foregut-borne viruses, the persistent transmission of circulative viruses, and the persistent transmission of propagative viruses followed by transmission barriers and vector competence. Three plant viruses are known to be transmitted in a semipersistent manner by leafhoppers. Two are waikaviruses— Maize chlorotic dwarf virus (MCDV) and Rice tungro spherical virus (RTSV)—and one a badnavirus— Rice tungro bacillform virus (RTBV). These three viruses are located mainly in phloem tissues of their host plants, although RTBV has also been found in xylem. Eleven geminiviruses are persistently transmitted in a circulative (non-propagative) manner by cicadellid leafhoppers, whereas one geminivirus, Tomato pseudo-curly top virus (TPCTV), is transmitted in this manner by a membracid treehopper. At least 41 plant viruses, belonging to five groups (or genera), are transmitted either by leafhoppers or planthoppers in a persistent propagative manner. Four groups of barriers to transmission of propagative viruses in their vectors have been identified: midgut infection barrier; dissemination barriers; salivary gland escape barrier; and transovarial transmission barriers. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,476 |
The human intestinal microbiota plays an important role in human health. While adhesion to gastrointestinal mucosa is a prerequisite for colonisation, inhibition of adhesion is a property which may prevent or reduce infections by food borne pathogens. Streptococcus thermophilus and Lactobacillus delbrueckii subsp. bulgaricus represent the two lactic bacteria constituting the yoghurt culture. These starter cultures have been claimed to be probiotic. In our study we compared two S. thermophilus strains (i.e. lysogenic strain J34 and corresponding non-lysogenic [prophage-cured] strain J34-6), with respect to (1) their in vitro adhesion properties to HT29 cells and (2) their cell surface hydrophobicities. Effects of the two strains on inhibition of adhesion of the pathogens Listeria monocytogenes Scott A, Staphylococcus aureus 6732 and Salmonella enteritidis S489 were studied in vitro with HT29 cell cultures. Lysogenic strain J34 was shown to be considerably more effective than the non-lysogenic derivative st... | ABSTRACT Screening for lysogenic lactobacilli in rat fecal samples has identified Lactobacillus murinus EF-1. Whole-genome sequencing revealed a 2.30-Mb draft genome with 39.6% G+C content and 2,196 open reading frames. PHAST analysis identified three intact prophages of 26.1 kb, 25.4 kb, and 49.6 kb in size. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,477 |
SUMMARY Epidermal plastids of young sesame leaves and cotyledons contain amorphous membrane bound inclusions similar to those found in the mesophyll. However, unlike the mesophyll inclusions which disappear during chloroplast development, those in epidermal plastids persist, even in fully mature leaves where a limited grana fretwork system develops. The limiting membrane of the inclusion is apparently continuous with both the tubular complex of light grown tissues and the prolamellar body of etiolated tissues as well as with the granal and integranal membranes. These associations, as well as a decrease in staining density of the inclusion with maturation, are interpreted as indications of a precursor-product relationship of the inclusion and a grana fretwork. The coexistence of both grana and the (presumably) proteinaceous inclusion manifest the multifunctional capacity of plastids. | Ripe, deep-red fruits of Palisota barteri contain tubulous chromoplasts which develop from unpigmented leucoplasts. These plastids contain, besides large spherical inclusion bodies, numerous osmiophilic globules which, in the course of ripening, frequently show transition states to tubular structures. The tubules contain, in all stages of their development, acylated β-citraurin, which is also the main pigment of Citrus fruits. The tubular structures have been isolated, fragmented by French-pressure treatment, and separated into three fractions on sucrose gradients. The lightest fraction (1.044 g·cm(-3)) contained thick fragments ('saccules') with diameters of 50-60 nm, whereas the heaviest (1.083 g·cm(-3)) consisted of tubules 20-25 nm in diameter. The relative amounts of polar lipids, proteins, and carotenoids of the different fractions are consistent with a molecular structure model of tubules and saccules, according to which a wick of longitudinally oriented carotenoid molecules of variable thickness is coated by a monolayer of polar lipids and proteins. High-resolution 'negative-stainings' showed the surface of the tubules to be covered with globular particles of about 6 nm diameter. The main protein of all fractions is a 30-kDa polypeptide; it is assumed that the particles are oligomers of this specific protein. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,478 |
Clostridium difficile is a major cause of infectious diarrhea in hospitalized patients. Many pathogenic strains of Clostridium difficile produce two toxins TcdA and TcdB, both of which are pro-inflammatory and enterotoxic in human intestine. Clinically relevant toxin A-negative, toxin B-positive (A(-)B(+)) strains of Clostridium difficile that cause diarrhea and colitis in humans have been isolated with increasing frequency worldwide. This perspective describes these important toxin variant strains and highlights the need to use Clostridium difficile diagnostic methods that can detect both TcdA and TcdB. | The bacterium Clostridium difficile is the leading cause of healthcare associated diarrhoea in the developed world and thus presents a major financial burden. The main virulence factors of C. difficile are two large toxins, A and B. Over the years there has been some debate over the respective roles and importance of these two toxins. To address this, we recently constructed stable toxin mutants of C. difficile and found that they were virulent if either toxin A or toxin B was functional. This underlined the importance of each toxin and the necessity to consider both when developing countermeasures against Clostridium difficile infection (CDI). In this article we discuss our findings in the context of previous work and outline some of the challenges which face the field as a result. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,479 |
A histochemical technique which permits the simultaneous visualization of heavy metals and acid phosphatase at the ultrastructural level is described. The technique was applied to the anterior pituitary gland, the spinal cord and the liver. In all of the tested organs, both mercury and silver were found to accumulate primarily in the lysosomes, although small amounts of both metals could be observed in other organelles including endocytotic vesicles. In the anterior pituitary, few mercury deposits were found in the secretory granules. | Juvenile rainbow trout ( Salmo gairdneri ) were exposed to 100 ppb mercury (as HgCl 2 ) in the water for 14 days. Concentrations of mercury in water and fish organs were monitored using radiolabeled mercury. Tissues from kidney and liver were fixed, and sections were developed by autometallography, a method whereby accumulations of mercury sulfides and/or mercury selenides are silver amplified. In the kidney, mercury was found within lysosomes and extracellularly in the basal lamina of proximal tubules. In the liver, mercury was found within lysosomes of the hepatocytes. Additional groups of mercury-exposed trout were subjected to selenium (as Na 2 SeO 3 ), administered intraperitoneally 2 hr before fixation. Following this treatment, additional mercury could be visualized in the kidney circulatory system, including glomeruli, and in the nucleus and endoplasmic reticulum of liver cells. It is suggested that the mercury visualized prior to selenium treatment represents inorganic mercury, while additional mercury visualized after selenium administration represents an organic form. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,480 |
An in vitro study was carried out to investigate the volatile odorous metabolites produced by necrotic enteritis inducing Clostridium perfringens (Cp) type A field strain (EHE-NE18) cultured in two broth media (thioglycollate broth, brain heart infusion broth) at three levels (0, 103 cfu/mL, 106 cfu/mL) using 2 × 3 factorial arrangement of treatments, with each replicated three times. The culture media with and without Cp was freshly prepared on the day of measurement and the culture headspace concentration of odorants was measured using selected ion-flow tube mass spectrometry (SIFT-MS). The results showed that media type and Cp level affected the concentration of a range of volatile odorous metabolites including sulfur compounds, alcohols, ketones, amines, and carboxylic acids. Thus, Cp contributes to the production of a wide range of odorous metabolites that can impart noxious smell during infection. | A head-space gas chromatographic technique for the analysis of volatile bacterial metabolites is described. Bacteroides fragilis, Clostridium perfringens, and Propionibacterium acnes, cultured in a glucose-containing peptone yeast extract medium, were studied. The head-space technique was compared with the injection of the complete liquid culture medium, and solvent extracts thereof, into the gas chromatograph. Volatile fatty acids could be detected by all three methods, whereas alcohols produced by C. perfringens and P. acnes were detectable only in the head-space chromatograms. Both FFAP and Porapak Q were used as gas chromatography stationary phase. Porapak Q was found more suitable than FFAP for the separation of alcohols. The head-space technique requires a minimum of preparation before the analysis and is well suited to automation. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,481 |
At maturity the high-lysine barley (Hordeum vulgare L.) Ris0 mutants 1508, 527 and 29 kernels contained about 20% less starch and twice as much free sugars as the parent varieties Bomi and Carlsberg II. An enhanched effect on starch reduction and free sugar accumulation was observed during kernel development when the single mutants 527 and 29 are combined with the mutant 1508. At maturity, kernels of the double mutants 527/1508 and 29/1508 contained, respectively, 68 and 43% less starch than Bomi. ::: ::: ::: ::: The double mutant 29/1508 kernel had a slightly lower prolamin content than mutant 1508 which is the most prolamin-deficient single mutant. In the double mutant 527/1508, however, an almost complete suppression of prolamin synthesis was observed during kernel development. The percentage of lysine in the seed proteins of the double mutants was about the same as in the most extreme single mutant 1508. ::: ::: ::: ::: Based on the additive effect of the individual high-lysine genes in the double mutants, it is concluded that the influences of these genes on prolamin and starch synthesis are independent. | The lys 3a gene present in the barley mutant Riso 1508 results in an increased content of lysine in the grain. Previous studies have shown that this increase results from a decreased accumulation of hordein and an increase in other more lysine-rich proteins and in free amino acids. We report here a detailed examination of the effects of this gene on the different groups of hordein polypeptides and the mRNAs encoding them. The amounts of the two major groups of hordein polypeptides (B and C hordein) were reduced to about 20 and 7%, respectively, of those present in the parental variety (Bomi), with a greater effect on one of the two subfamilies of B polypeptides. In contrast, the amounts of D hordein polypeptides were increased fourfold. In vitro translations of polysomal and total cellular RNA fractions showed similar effects on the relative amounts of hordein products synthesized. More detailed analyses of the populations of hordein mRNAs were made using specific cDNA clones and hybrid-selection translation, Northern hybridization, and “hybrid-dot” analysis. Only traces of mRNAs for “C” hordein were detected, while the abundances of mRNAs for the two subfamilies of B hordeins were reduced to 40 and 5% of those in Bomi. The amount of mRNA for D hordein was increased twofold. A cDNA clone related to B hordein was used to analyze genomic DNA fractions by Southern hybridization. The lys 3a gene had no effect on either the number (about 10) or the organization of the B hordein genes. These studies clearly demonstrate that the effects of the lys 3a gene on the amounts of the hordein polypeptides are closely related to changes in the amounts of the mRNAs encoding them. Although the exact effect of the gene remains unknown, it is most likely to be either at transcription or on the early processing of the mRNA. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,482 |
Long interspersed nuclear elements [LINE-1 (L1)] are abundant retrotransposons in mammalian genomes that remain silent under most conditions. Cellular stress signals activate L1, but the molecular mechanisms controlling L1 activation remain unclear. Evidence is presented here that benzo( a )pyrene (BaP), an environmental hydrocarbon metabolized by mammalian cytochrome P 450s to reactive carcinogenic intermediates, increases L1 retrotransposition in HeLa cells. Increased retrotransposition is mediated by up-regulation of L1 RNA levels, increased L1 cDNA synthesis, and stable genomic integration. Activation of L1 is dependent on the ability of BaP to cause DNA damage because it is absent in HeLa cells challenged with nongenotoxic hydrocarbon carcinogens. Thus, the mutations and genomic instability observed in human populations exposed to genotoxic environmental hydrocarbons may involve epigenetic activation of mobile elements dispersed throughout the human genome. (Cancer Res 2006; 66(5): 2616-20) | Some halogenated aromatic hydrocarbons· (HAHs) such as the polychlori nated biphenyls have been used extensively for commercial purposes. Related compounds, such as the halogenated dibenzo-p-dioxins and dibenzofurans, have no commercial value themselves but are generated during the man ufacture or combustion of other HAHs. In general, HAHs are lipophilic and stable; halogenation renders them relatively resistant to enzymatic conversion to water-soluble derivatives. Therefore, HAHs tend to persist in the environ ment and to accumulate in the food chain, posing a potential risk to human health (l, 2). Toxicologic evaluations reveal that the various HAHs evoke similar responses, although they differ by orders of magnitude in potency; therefore, they are believed to share a common mechanism of action. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,483 |
We present here the crystal structures of human lamin B1 globular tail domain and coiled 2B domain, which adopt similar folds to Ig-like domain and coiled-coil domain of lamin A, respectively. Despite the overall similarity, we found an extra intermolecular disulfide bond in the lamin B1 coil 2B domain, which does not exist in lamin A/C. In addition, the structural analysis indicates that interactions at the lamin B1 homodimer interface are quite different from those of lamin A/C. Thus our research not only reveals the diversely formed homodimers among lamin family members, but also sheds light on understanding the important roles of lamin B1 in forming the nuclear lamina matrix. | Nuclear intermediate filament networks formed by A- and B-type lamins are major components of the nucleoskeleton that are required for nuclear structure and function, with many links to human physiology. Mutations in lamins cause diverse human diseases ('laminopathies'). At least 54 partners interact with human A-type lamins directly or indirectly. The less studied human lamins B1 and B2 have 23 and seven reported partners, respectively. These interactions are likely to be regulated at least in part by lamin post-translational modifications. This review summarizes the binding partners and post-translational modifications of human lamins and discusses their known or potential implications for lamin function. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,484 |
We have used a novel cell marker, in which the twist promoter directs the synthesis of the cell surface protein CD2 (twi-CD2) to examine the development of the mesoderm in the Drosophila embryo after gastrulation and to locate the progenitor cell populations for different mesodermal derivatives. We find that the early mesoderm in each segment is divided into a more anterior region with relatively low levels of twist and twi-CD2 expression and a more posterior region where twist and twi-CD2 expression are high. This subdivision coincides with regional assignments of cells to form different progenitors: dorsal anterior cells invaginate to form an internal layer from which the visceral mesoderm is derived. Ventral anterior cells form progenitors of mesodermal glial cells. Dorsal posterior cells form heart. Ventral and dorsal posterior cells form somatic muscles. We conclude that the metamerically repeated anterior-posterior subdivision of the mesoderm is an essential element in laying out the pattern of mesodermal progenitor cells and in distinguishing between an internal cell layer which will give rise to the progenitors of visceral muscles and an external layer which will generate the somatic muscles and the heart. | The visceral muscles of the Drosophila midgut consist of syncytia and arise by fusion of founder and fusion-competent myoblasts, as described for the somatic muscles. A single-step fusion results in the formation of binucleate circular midgut muscles, whereas a multiple-step fusion process produces the longitudinal muscles. A prerequisite for muscle fusion is the establishment of myoblast diversity in the mesoderm prior to the fusion process itself. We provide evidence for a role of Notch signalling during establishment of the different cell types in the visceral mesoderm, demonstrating that the basic mechanism underlying the segregation of somatic muscle founder cells is also conserved during visceral founder cell determination. Searching for genes involved in the determination and differentiation of the different visceral cell types, we identified two independent mutations causing loss of visceral midgut muscles. In both of these mutants visceral muscle founder cells are missing and the visceral mesoderm consists of fusion-competent myoblasts only. Thus, no fusion occurs resulting in a complete disruption of visceral myogenesis. Subsequent characterisation of the mutations revealed that they are novel alleles of jelly belly (jeb) and the Drosophila Alk homologue named milliways (mili(Alk)). We show that the process of founder cell determination in the visceral mesoderm depends on Jeb signalling via the Milliways/Alk receptor. Moreover, we demonstrate that in the somatic mesoderm determination of the opposite cell type, the fusion-competent myoblasts, also depends on Jeb and Alk, revealing different roles for Jeb signalling in specifying myoblast diversity. This novel mechanism uncovers a crosstalk between somatic and visceral mesoderm leading not only to the determination of different cell types but also maintains the separation of mesodermal tissues, the somatic and splanchnic mesoderm. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,485 |
To clarify Holocene development of the Huanghe (Yellow River) delta and the relationship between delta progradation and chenier formation, detailed sediment analyses and high-resolution radiocarbon dating were done on borehole samples taken from two sites on the present Huanghe; H9601 (Latitude 37°40.5′N and Longitude 118°28.7′E with an altitude of +5.5 m) and H9602 (Lat. 37°47.8′N and Long. 118°54.3′E, +4.8 m). Downcore changes of sediment facies and accumulation rate show that delta progradation occurred at least twice during ca 2.6–1.2 C-14 yrBP and 1855–present at the two borehole sites. These phases of progradation correlate with Superlobes 6 and 7 and Superlobe 10 respectively, of ten superlobes composing the Holocene Huanghe Delta shown by C. Xue (Historical changes in the Yellow River delta, China, Marine Geology 113, 321–329, 1993). The boundary of these sediments at H9602 is sharp and erosional, and correlates with cheniers located between borehole sites on the delta plain. The diastem period between these phases of progradation almost coincides with the periods when the river mouth of the Huanghe was located in the northwestern part of the Bohai Sea during 1048–1128 AD (Superlobe 8), and the Jiangsu region facing the Yellow Sea during 1128–1855 (Superlobe 9). This suggests that chenier formation and delta progradation are linked, and controlled by sediment supply and river course shifts of the lower reaches of the Huanghe. | We present a provenance study of two cores (YSC-1 and YSC-4) from the Central Yellow Sea Mud (CYSM) to investigate the source and transport processes of clay minerals during the Holocene. Clay mineral assemblages of Cores YSC-1 and YSC-4 mainly consist of illite, followed by chlorite and kaolinite, and scarce smectite. Combined with other published data, it is found that the fine sediments in the CYSM are most likely a mixing product of the Changjiang and Korean Peninsula small rivers sediments. In contrast, the influence of Huanghe sediments is rather limited and only appears in the bottom part of Core YSC-1. Decreased contribution of terrigenous supply from the Changjiang to the CYSM since 6.4 ka may be related to the formation of modern ocean circulation pattern. After 6.4 ka, the finer sediments of Taedong and Chongchon Rivers from the northern Korean Peninsula are dominated in the CYSM. The oceanic fronts likely prevent both the suspended sediments of the west (modern and older Huanghe) and east (southern Korean Peninsula small rivers) sides from dispersing into the central Yellow Sea. Our results thus highlight the highly complex nature of sediment source and dispersal pattern in the Yellow Sea during the Holocene. More detailed studies are needed to better understand the sediment source-to-sink history of Yellow Sea. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,486 |
Mycelial cord systems, up to 50-cm diameter, of the basidiomycete Phanerochaete velutina (DC.: Pers.) Parmasto, a common woodland saprotroph, grown on non-sterile soil in model laboratory microcosms were baited, after 27 d, with pairs of fresh beech wood blocks (baits), placed at 10 d intervals behind the foraging colony margin. System development was quantified by image analysis. Mean radial extent and hyphal cover increased linearly with time until day 21, but declined before the mycelial systems reached the edges of the laboratory microcosms. The mass (DBM) and border (DBS) fractal dimensions of the mycelial systems changed with time but the ratio DBM∶DBS became constant after 14 d. A separate central compartment containing the inoculum was supplied with 32P orthophosphate and its translocation to wood baits monitored non-destructively for 73 d. Whilst total 32P acquisition by wood baits increased linearly with time, the proportion of total allocated to baits varied significantly both temporally and according to the length of time that baits had been in contact with the mycelium. Most recently supplied wood baits were not the main sink for supplied phosphorus; rather, the rate of 32P acquisition was initially greatest in baits from which egress of the fungus had already occurred. The rate of 32P acquisition by the most recently added baits increased with time, supported by efflux from other wood baits, which had initially been the main sinks for translocated phosphorus. The results raise important questions about the ecological and functional significance of nutrient partitioning in cord systems and imply that ‘observed’ translocation, rather than being an absolute measure, indicates the degree to which phosphorus is loaded from a translocation stream in regions where it is being actively utilized and/or stored. | The development and physiology of cord-forming saprotrophic basidiomycetes, which form extensive and persistent mycelial networks in woodland ecosystems, can be conveniently studied on non-sterile soil in laboratory microcosms mimicking field conditions. Morphological responses of Phanerochaete velutina mycelial systems to resource encounters, and decay partitioning following encounters, varied according to whether simulated woody litter was unsterile or autoclaved and on whether encounter took place at the mycelial foraging front or behind the margin (simulating litter fall onto established systems in the field). Results show that encounter of discrete resources by P. velutina is rapidly communicated to the entire mycelial system; that resource capture takes high priority at the expense of continued system extension and decay-derived carbon reallocation; and that polarized growth toward newly encountered resources, previously considered to occur infrequently with this species, may be readily detected using image analysis techniques. Potential advantages of polarized development of P. velutina are discussed. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,487 |
Analyse du contenu des cellules musculaires de la moule en granules glio-interstitiels: determination de leur composition par cytochimie (microscopie de fluorescence) et analyse aux RX | A new group of fluorescent indicators with visible excitation and emission wavelengths has been synthesized for measurements of cytosolic free Ca2+. The five compounds, "rhod-1," "rhod-2," "fluo-1," "fluo-2," and "fluo-3" (Figs. 2 and 3), combine the 8-coordinate tetracarboxylate chelating site of 1,2-bis(2-amino-phenoxyethane-N,N,N',N'-tetraacetic acid with a xanthene chromophore to give a rhodamine-like or fluorescein-like fluorophore. Binding of Ca2+ increases the fluorescence by up to 40-fold. The Ca2+ dissociation constants are in the range 0.37-2.3 microM, so that the new indicators should give better resolution of high [Ca2+] levels than previously obtainable with quin-2 or fura-2. The visible excitation wavelengths of the new compounds are more convenient for fluorescence microscopy and flow cytometry than the UV required by previous indicators. However, the new dyes' increase in fluorescence upon binding calcium is not accompanied by a wavelength shift, so they are unsuitable for measurements using ratios at two wavelengths. The most promising dye of this series is fluo-3, whose initial biological testing in fibroblasts is described in the following paper (Kao, J. P. Y., Harootunian, A. T., and Tsien, R. Y. (1989) J. Biol. Chem. 264, 8171-8178). | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | fra_Latn | 23,488 |
Dipteryx alata Vogel popularly known as "baru" is an important commercial leguminous tree species from the Brazilian Cerrado, which possess medicinal properties, besides its fruits consumption by animals and humans. The use of the "naturally occurring plants" as herbal remedies and foods mainly from leaves, seeds, flowers and roots of plants or extracts require precautions before ensuring these are safe and efficacious. The objective of this study was to evaluate the safety of D. alata barks extract. Vegetal drugs of D. alata barks were submitted to quality control assays and further to the safety assays under 1) in vitro parameter by Salmonella (Ames) mutagenicity, and 2) in vivo parameter on the pregnancy of rats. The extract was non-mutagenic to any of the assessed strains TA97a, TA98, TA100 and TA102 even after metabolic activation (+S9). All in vivo parameters (reproductive ability evaluation, physical development of rat offsprings, and neurobehavioral development assays) showed no changes related to control group. D. alata barks extract is neither mutagenic by the Ames test nor toxic in the pregnancy of rats, with no physical-neurobehavioral consequences on the rat offsprings development. | Use of animals in toxicology studies acute toxicity testing multidose toxicity and carcinogenicity studies metabolism and toxicokinetics inhalation toxicology genetic toxicology developmental and reproductive toxicology neurotoxicity toxicologic pathology assessment good laboratory practice compliance use of transgenic animals for assessment of mutation and cancer health risk assessment of environmental agents -incorporation of emerging scientific information. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,489 |
We construct a “codon space” in which a given DNA sequence can be plotted as a function of its base composition in each of the three codon positions. We demonstrate that the base composition is very highly nonrandom, with sequences from more primitive organisms having the least random compositions. By using cluster analysis on the points plotted in codon space we show that there is a strong correlation between base composition and type of organism, with the most primitive organisms having the highest A or T content in the second and third codon positions. A smooth transition toward lower A+T and higher G+C content is observed in the second and third codon positions as the evolutionary complexity of the organism increases. Besides this general trend, more detailed structure can be observed in the clustering that will become clearer as the data base is increased. | The relationship between degeneracy in the genetic code and the occurrence of a strong codon bias is examined, with particular reference to a group of viral genomes. The present paper shows how codon bias may have been imposed by thermodynamic considerations at the time the primitive DNA first formed in the primordial soup. Using a four-state Ising-like model with stacking interactions between successive base pairs, we show how primeval periodic DNA polymers could have arisen the remnants of which are still observed in codon biases today. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,490 |
Objective To understand the genetic structures and variations of the superintegron (SI) in Vibrio cholerae isolated in the seventh cholera pandemic. Methods Polymerase chain reaction scanning and fragment sequencing were used. Sixty toxigenic V. cholerae O1 El Tor strains isolated between 1961 and 2008 were analyzed. Results Some variations were found, including insertions, replacements, and deletions. Most of the deletions were probably the result of recombination between V. cholerae repeat sequences. The majority of the variations clustered together. The SIs of the strains isolated in the 1960s and 1970s showed more diversity, whereas SI cassette variations in strains isolated in the 1990s and after were lower, with ∼24 kb signature sequence deletion. This indicates the predominant SI in the host during the epidemic in the 1990s and after. The insertion cassettes suggested the mobilization from the SIs of other V. cholerae serogroups and Vibrio mimicus . Conclusion The study revealed that structural variations of SIs were obvious in the strains isolated in epidemics in different decades, whereas the divergence was based on syntenic structure of SIs in these El Tor strains. Also, the continuing cassette flows in the SIs of the host strains during the seventh cholera pandemics were displayed. | The integron is a genetic element that incorporates mobile genes termed gene cassettes into a reserved genetic site via site-specific recombination. It is best known for its role in antibiotic resistance with one type of integron, the class 1 integron, a major player in the dissemination of antibiotic resistance genes across Gram negative pathogens and commensals. However, integrons are ancient structures with over 100 classes (including class 1) present in bacteria from the broader environment. While, the class 1 integron is only one example of an integron being mobilised into the clinical environment, it is by far the most successful. Unlike clinical class 1 integrons which are largely found on plasmids, other integron classes are found on the chromosomes of bacteria and carry diverse gene cassettes indicating a non-antibiotic resistance role(s). However, there is very limited knowledge on what these alternative roles are. This is particularly relevant to Vibrio species where gene cassettes make up approximately 1-3% of their entire genome. In this review, we discuss how emphasis on class 1 integron research has resulted in a limited understanding by the wider research community on the role of integrons in the broader environment. This has the capacity to be counterproductive in solving or improving the antibiotic resistance problem into the future. Furthermore, there is still a significant lack of knowledge on how gene cassettes in Vibrio species drive adaptation and evolution. From research in V. rotiferianus DAT722, new insight on how gene cassettes affect cellular physiology offers new alternative roles for the gene cassette resource. At least a subset of gene cassettes are involved in host surface polysaccharide modification suggesting that gene cassette may be important in processes such as bacteriophage resistance, adhesion/biofilm formation, protection from grazers and bacterial aggregation. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,491 |
Wheat streak mosaic (WSM) is a serious viral disease of wheat (Triticum aestivum L.) that is vectored by the wheat curl mite (Aceria tosichella Keifer). Deployment of wheat cultivars with vector resistance is a possible method for WSM control. This 3-yr (1996-1997/ 1998-1999) field study compared by means of a split-plot design the effect of different sources of mite-resistance backcrossed into a common winter wheat genetic background on both the spread of WSM and on the resulting yield losses. The various lines were first seeded early (in July) in blocks of spaced plots to provide different disease source or spreader treatments as main plots. The same winter wheat lines were then seeded in mid-September into the spaces between the spreaders as subplot treatments to mimic the crop. Main-plot (spreader) treatments included the mite-susceptible winter wheat cultivars CDC Kestrel or Norstar, two mite-resistant backcross lines of Norstar with resistance from Thinopyrum ponticum (Podpera) Liu & Wang (Nst*5/Cmc2) and Triticum tauschii (Coss.) Schmal. (Nst*5/ Cmcl) plus oat (Avena saliva L.) as a nonhost. The two mite-resistant winter wheat lines, plus another mite-resistant backcross line with resistance from rye (Secale cereale L.) (Nst*5/1R5-1BL) and Norstar were also used as subplot treatments. The presence of vector resistance in the spreader treatments reduced the intensity of disease symptoms in the spreader rows themselves and increased their grain yield. In 2 of 3 yr, these yield differences were dramatic. Resistance in the spreader also reduced the secondary spread of WSM into the adjacent winter wheat subplots with conventional planting dates. During severe outbreaks of WSM, (1996-1997 and 1997-1998), Nst*5/Cmc2 was more effective with a lower frequency of severely infected plants and smaller yield losses than Nst*5/Cmc1 or Nst*5/IRS-1BL. In conclusion, control of WSM through vector resistance requires an effective resistance gene in both the spreader and the crop. | Wheat streak mosaic virus (WSMV, genus Tritimovirus ; family Potyviridae ) is the most economically important virus of wheat in the Great Plains region of the USA. WSMV is transmitted by the eriophyid wheat curl mite (WCM), Aceria tosichella Keifer. In contrast to Hemipteran-borne plant viruses, the mode and mechanism of eriophyid mite transmission of viruses have remained poorly understood, mostly due to difficulty of working with these ∼200 μm long microscopic creatures. Among eriophyid-transmitted plant viruses, relatively extensive work has been performed on population genetics of WCMs, WSMV determinants involved in WCM transmission, and localization of WSMV virions and inclusion bodies in WCMs. The main focus of this review is to appraise readers on WCM, WSMV encoded proteins required for WCM transmission and further details and questions on the mode of WSMV transmission by WCMs, and potential advances in management strategies for WCMs and WSMV with increased understanding of transmission. | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,492 |
Although learning and physiological studies have suggested that criminal psychopaths are characterized by excessive selective attention, divided attention studies have demonstrated deficits suggesting inadequate breadth of attention but not reduced attention to explicit secondary contingencies. Divided attention studies also suggest poorer information-processing in psychopaths given left hemisphere activation regardless of selective attention. To provide more powerful tests of these hypotheses, 129 righthanded male inmates, assessed by Hare's Psychopathy Checklist-Revised (PCL-R) (Hare, 1985), completed a divided visual field task with two lateralized stimuli per trial under conditions promoting attention relatively focused on one of the tasks or equally divided between the two tasks. Under focusing conditions promoting left hemisphere activation, psychopaths misclassified more secondary task and marginally more primary task targets than nonpsychopaths. Psychopaths also overresponded to distractors on both tasks under focusing conditions, replicating reduced breadth of attention but not inattention to secondary targets. However, no performance deficits were evident under equally divided attention conditions. Regressions indicated that both empirically validated dimensions of psychopathy contributed to observed deficits. Reduced breadth of attention under focusing conditions and cognitive deficits given left hemisphere activation appear viable explanations of psychopaths' performance deficits. | Received: 14.06.2011 – Accepted: 29.11.2011 1Psyciatrist, 2Prof., Ankara University Faculty of Medicine, Department of Psychiatry, Psychiatric Rehabilitation Unit, 3Assoc Prof, Ankara University Faculty of Medicine, Department of Psychiatry, Geropsychiatry Unit, Ankara; 4Psychologist, Guidance and Counseling Service, Bosphorus Commandership, Canakkale; 5Psych, 6Nurse, Psychiatry Department, Canakkale Military Hospital, Canakkale, Turkey | We prove that groups acting geometrically on delta-quasiconvex spaces contain no essential Baumslag-Solitar quotients as subgroups. This implies that they are translation discrete, meaning that the translation numbers of their nontorsion elements are bounded away from zero. | eng_Latn | 23,493 |
Wireless rechargeable sensor networks (WRSN) have attracted considerable attention in recent years due to the constant energy supply for battery-powered sensor nodes. However, current technologies only enable the mobile charger to replenish energy for one single node at a time. This method has poor scalability and is not suitable for large-scale WRSNs. Recently, wireless energy transfer technology based on multi-hop energy transfer has made great progress. It provides fundamental support to alleviate the scalability problem. In this paper, the node energy replenishment problem is formulated into an optimization problem. The optimization objective is to minimize the number of non-functional nodes. We propose the uneven cluster-based mobile charging (UCMC) algorithm for WRSNs. An uneven clustering scheme and a novel charging path planning scheme are incorporated in the UCMC algorithm. The simulation results verify that the proposed algorithm can achieve energy balance, reduce the number of dead nodes, and prolong the network lifetime. | In modern transportation, traffic congestion has become an urgent problem in large and medium-sized cities. In smart transportation systems, it is an effective solution to design load balancing path planning algorithms that can dynamically adapt to traffic conditions in order to avoid congestion. In this work, a traffic path planning algorithm based on data prediction (TPPDP) is proposed to find the path with the shortest travel time, which is built on a predictive model based on historical traffic data and current traffic information. Furthermore, a path planning algorithm based on data prediction with load balancing (TPPDP-LB) is also proposed, which combines the predicted information and the number of concurrent requests to achieve the path with shortest travel time while maintaining global load balancing. A specific distributed computing framework for TPPDP-LB algorithm is designed to reduce the runtime of the algorithm. The simulation results proved that both TPPDP and TPPDP-LB algorithms have the advantage of shortest travel time, and TPPDP-LB algorithm achieves load balancing of computing. It is also proved that the distributed computing framework designed for TPPDP-LP algorithm can effectively reduce the runtime of system as well as keep the accuracy of algorithm. | The circadian pacemaker in the suprachiasmatic nuclei (SCN) controls endogenous near 24-h physiological and behavioral rhythms in metabolism, neuroendocrine function, and locomotor activity. Recently, we showed that vasoactive intestinal polypeptide (VIP) and its receptor, VPAC(2) are critical to the intercellular communication between individual SCN neurons, and appropriate synchronization and phasing of these oscillatory cells. Mice defective in VIP signaling manifest grossly impaired circadian rhythms of SCN neuronal firing activity and are typically unable to maintain rhythmic wheel-running behavior in the absence of external time cues. Here we report that daily rhythms of metabolism and feeding behavior are also overtly altered in these animals. Under diurnal conditions (12:12-h light-dark; LD), metabolic and feeding rhythms are advanced in mice lacking either VIP or VPAC(2) receptor expression, peaking in the late day, rather than early night, as observed in wild-type mice. When placed in constant light (LL), both VIP-deficient and VPAC(2) receptor-knockout mice exhibit dampening of metabolic and feeding rhythms, which deteriorate after a few days. In addition, overall metabolic rate is greatly reduced in VPAC(2)-knockout mice, when compared with wild-type mice, regardless of lighting condition. The advancement of metabolic and feeding rhythms in these mice under LD suggests that these rhythms are less sensitive to masking by light. These results demonstrate that altering SCN function not only affects neuronal and wheel-running activity rhythms but also dramatically impairs temporal regulation of metabolism and feeding. | eng_Latn | 23,494 |
This document defines how Unique Local IPv6 Unicast Addresses (RFC- ::: 4193) can be used in wireless mobile ad hoc networks (MANETs) as MANET ::: Local IPv6 Addresses (MLAs). MLAs are intended to be used inside a ::: MANET and are not expected to be routable on the global Internet. Each ::: MANET router is expected to generate its MLA locally without any ::: coordination with other MANET routers. | A Mobile Ad hoc NETwork (MANET) could establish a communication in network infrastructure-less places. In an ad hoc network, a basic IPv6 address auto-configuration mechanism has an address allocation problem. A number of address allocation mechanisms have been suggested. However, mobile node(MN)s have high mobility and random address. Therefore, they do not guarantee fixed and shared network prefix. To guarantee equality of network prefix among connected MNs, we propose a MANET identifier (MANET.ID). This scheme allows MNs to share the same MANET_ID using a creation & negotiation phase. By sharing an equal MANET_ID, we achieve a number of enhancements for existing ad hoc network technologies: Enhanced group communication, avoiding duplicate address detection storms, and enhanced zone routing protocol (ZRP). | Components of human diets may influence the incidence of colorectal adenomas, by modifying exposure or susceptibility to DNA-damaging alkylating agents. To examine this hypothesis, a food frequency questionnaire was used to assess the diet of patients recruited for a case-referent study where biopsies of normal colorectal mucosa were collected during colonoscopy and subsequently analysed for DNA N7-methylguanine (N7-MeG) levels, as an indicator of exposure, and activity of the DNA repair protein O6-alkylguanine DNA-alkyltransferase (MGMT), as an indicator of potential susceptibility. Cases with histologically proven colorectal adenomas (n = 38) were compared with referents (n = 35) free of gastrointestinal neoplasia. The case group consumed significantly more red meat (4.5 versus 3.4 servings/week, P < 0.05), processed meats, (4.7 versus 3.2 servings/week, P < 0.05) and % food energy as fat (34.9 versus 30.7%, P < 0.001). N7-MeG [mean: 95% confidence interval (CI)] levels were significantly lower in the group that consumed the highest proportion of dietary fibre/1000 kcal in comparison with the group with the lowest intake (0.61; 0.35-0.86 versus 1.88; 0.88-2.64 micromol/mol dG, P < 0.05). N7-MeG levels were also inversely associated with folate consumption (P < 0.05). MGMT activity (mean; 95% CI) was significantly higher in the group with the lowest consumption of vegetables than in the group with the greatest vegetable consumption (7.02; 5.70-8.33 versus 4.93; 3.95-5.91 fmol/microg DNA, P < 0.05). Our results are consistent with the hypothesis that dietary factors may modify exposure or susceptibility, respectively, to DNA damage by alkylating agents. | eng_Latn | 23,495 |
An all-n-type dynamic adder for ultra-low-leakage IoT devices | Ultra-low leakage is demanded for low-duty-cycled IoT applications. An NP-type dynamic ripple-carry adder (NP-RCA) was shown outperforming the static design in terms of energy based on pre-layout simulations. We will show that the NP-RCA suffers from serious parasitic RC effects. We then propose an all-N-type RCA (All-N-RCA) in this work to reduce the influence of parasitic effects to achieve a much higher speed with a much lower leakage current. All the designs are evaluated according to post-layout simulation results in 28 nm CMOS. For an IoT application with a 0.02% duty cycle, the 32b All-N-RCA achieves a 57% energy reduction compared to the static counterpart at the typical process corner. | In wireless ad-hoc networks,routing based on connected dominating set is a promised approach,where the searching space for route is reduced to nodes in the dominating set.But most of the algorithms can’t work well in unidirectional wireless ad-hoc networks.To the fact of the unidirectional links in wireless ad hoc networks we propose a maximal weighted algorithm for minimum connected dominating set. Also, we improve the correctness of the algorithm. Simulation results show that proposed approach can ensure the fewer nodes to form connected dominating set. | eng_Latn | 23,496 |
MVGDRA: Modified Virtual Grid based Dynamic Routes Adjustment Scheme for Mobile Sink-based Wireless Sensors Networks | A routing protocol using relative landmark based on virtual grid in wireless sensor network | Membranoproliferative glomerulonephritis with disruption of the glomerular basement membrane. | eng_Latn | 23,497 |
Modeling End-to-End Throughput of Multiple Flows in Wireless Mesh Networks | On False Blocking in RTS/CTS-Based Multihop Wireless Networks | SNARE Function Is Not Involved in Early Endosome Docking | eng_Latn | 23,498 |
Performance evaluation of an energy efficient clustering algorithm based on heterogeneous node deployment in a wireless sensor network | Energy-efficient routing protocols for wireless microsensor networks | The multi-configurational time-dependent Hartree approach | eng_Latn | 23,499 |
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